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Report for CCDS23287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23287.1 Public Mus musculus 9 Cilp 23 108 98 CCDS HistoryNCBI Gene:214425Re-query CCDS DB by CCDS ID:23287.1Re-query CCDS DB by GeneID:214425See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23287.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048762.7 ENSMUSP00000036631.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048762.7Link to Ensembl Protein Viewer:ENSMUSP00000036631.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000048762Re-query CCDS DB by Protein ID:ENSMUSP00000036631
Original member Current member NCBI NM_173385.3 NP_775561.1 Accepted alive Link to Nucleotide Sequence:NM_173385.3Link to Protein Sequence:NP_775561.1Re-query CCDS DB by Nucleotide ID:NM_173385Re-query CCDS DB by Protein ID:NP_775561Link to BLAST:NP_775561.1

Chromosomal Locations for CCDS 23287.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 65267132 65267192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65269525 65269617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65270131 65270400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65272803 65272982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65273509 65273823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65274530 65274638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65275844 65276001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65277811 65280377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3753 nt):
ATGGCAGCAATCAAGACTTGGGTATTCTCTTTCCTGGTCCTTGAGGTCACCACCGTGCTGGGGAGACAGA
CGATGCTTGCCCAGTCAGTGAGAAGAGTCCAGCCTGTGAAGAGGACCCCCAAGACCCTTGCCAAGCCTGC
CGACTCCCAGGAGAGTCCCGGAGAGTGGACAACATGGTTTAACATCGACCACCCAGGTGGGCAGGGTGAC
TATGAGCGGCTGGATGCCATTCGCTTCTACTATGGGGAGCGTGTGTGTGCCCGTCCCCTGCGGCTAGAGG
CCCGGACCACTGACTGGATGCCTGCGGGCAGCACTGGCCAGGTGGTCCACGGCAGTCCCCGTGAGGGCTT
CTGGTGCCTCAACAGGGAGCAGAGACCAGGCCAGAACTGTTCCAATTATACCGTGCGCTTCCTCTGCCCA
CCAGGGTCCTTGCGAGGAGATGCAGAGCACATCTGGAGTTCCTGGTCTCCCTGGAGCAAGTGCTCAGCTG
CCTGCGGTCACACTGGGGTGCAGACCCGTACCCGCACCTGCTTGGCACAGACAGTGTCACTGTGCAGTGA
GGCGACCGAGGAGGGCCAGCTCTGCATGAGCCAGGCCTGCACAGCTTGTGACCTGACCTGCCCCATGGGC
CAGGTAAATGCTGACTGTGATGCCTGCATGTGCCAGGACTTCATGCTTCACGGGGCCATCTCCCTCCCTG
GAGGTGGCCCAGCTCCAGGAGCCGCTGTCTACCTGCTGGCCAAGGCACCAAAGATGCTGACCCGAACAGA
CAGCAGCGGGAGGTTCCGAGTTCCTGGCTTGTGTCCTGATGGCAAAACCATCCTGAAAATCACCAAGACC
AAGTTTGCCCCAATTATGATCACGATGCCCAAGACTAGCCTGAAGTCAGCTACCATCAATGCGGAGTTTG
TGAGGGCAGAGACCCCATACATTGTAATGAACCCTGAGATGAAAGCACGTCGGGCTGGGCAGAGTGTGTC
TCTGTGCTGCAAAGCCACGGGGAAACCCAGTCCGGACAAGTACTTCTGGTACCACAACAACACACTGCTG
GATCCCTCCCTCTATAAGCACGAGAGCAAGCTGGTGCTGAGGAACCTGCAGCAGGACCAAGCAGGGGAGT
ACTTCTGTAAGGCTCAGAGTGATGCTGGGGCTGTGAAGTCCAAGGTCACCCAGCTCACTGTCATTGCACA
TGATGAGACTCCTTGCAACCCAACCCCAGAGAGCTACCTTATCCGGCTGCCCCATGACTGCTTTCAGAAC
GCCAGCAATTCCTTCTACTACGACGTAGGCCGCTGCCCGATCAAGACCTGTGCAGGGCAGCAGGACAATG
GGATCCGGTGCCGAGATGCTGTGGAGAACTGCTGCGGCATTTCCAGAACAGAAGAGAGGGAGATCCAGTG
CAGTGGGTACACACTGCCCACCAAGGTGGCTGTGGAGTGCAGCTGCCAACGATGCGCAGAGACACGGAGC
ATCGTCCGGGGCCGAGTCACTGCTGCTGACAACGGGGAGCCCATGCGCTTTGGCCATGTGTACATGGGGA
ATAACCGCGTGAGCATGACTGGCTACAAAGGCACCTTCACACTCCACATCCCCCAGGACACGGAGAGGCT
GGTGCTCACATTTGTGGACAGGCTGCAGAAGTTTGTCAACACAACCAAAGTGCTGCCCTTCAACAAGAAG
GGAAGCGCAGTGTTCCACGAGATCAAGATGCTTCGGCAGAAAGAGCCCATCACGTTGGAAGCCATGGAGA
CCAACATTATCCCCCTGGGAGAGGTGATTGGTGAAGACCCTGTGGCTGAGCTGGAGATCCCATCCAAAAG
TTTCTATAGGCAGAACGGGGAGCCCTTCACAGGAAAGGTAAAGGCCAGCGTGACCTTCCTGGATCCTCGG
AACATCTCGACGGCCACAGCTGCCCAAAGTGACCTCAACTTCATCAATGATGAAGGAGACACTTTTCCCC
TTAGAACATATGGTATGTTTTCAGTGGACTTTAGAGATGAGGCCACTTCCGAGTCACTTAATGCTGGCAA
GGTGAAGGTCCACCTTGACTCGACCCAGGTCAAAATGCCAGAGCATGTGCCAGCCATGAAACTCTGGTCG
CTCAACCCAGACACAGGACTGTGGGAAGAGGAAGGGGATTTCAAGTTTGAAAGCCAAAGGAGGAACAAGA
GGGAAGAGAGAACCTTCCTAGTGGGCAATATGGAGATCCGGGAGAGAAGGCTCTTTAACCTGGACGTCCC
TGAAAGCCGAAGGTGCTTCATTAAGGTGAGGACTTACCGGAGTGAGAGGTTCCTGCCCAGTGAGCAAATT
CAGGGAGTTGTGGTCTCAGTGATCAATCTGGAGCCCAGAACTGGCTTCTCATCTAACCCCAGGGCCTGGG
GCCGATTTGACAGTGTCATCACAGGGCCCAATGGGGCCTGCCTGCCTGCCTTCTGTGATGATCAGTCCCC
CGATGCTTACTCTGTCTATGTCTTGGCAAGCCTTTCTGGAGAAGAACTAGAGGCAGTTGAGTCTTCTCCT
AAATTCAACCCAAATGCAATCGGTGTCCCTCAGCCTTACCTCAACAAACTTAAATACCGTCGGACAGACC
ATGAGGATCCACGGGTTAAAAAGACGGCTTTCCAAATCAGTATGGCCAAACCAAGGCCCAACTCAGCTGA
GGAGAGCAATGGGCCTATCTATGCCTTTGAGAACCTTCGGGCGTGTGAGGAGGCACCCCCCAGTGCAGCT
CACTTCCGGTTCTATCAGATCGAGGGGGATCGCTATGACTATAACACAGTTCCTTTCAATGAAGATGACC
CTATGAGCTGGACTGAAGACTACCTGGCATGGTGGCCCAAGCCAATGGAGTTCAGGGCCTGCTATATCAA
GGTTAAGATTGTGGGGCCACTGGAGGTGAATGTACGATCCCGTAACATGGGAGGCACCCACCGGCAGACT
GTGGGGAAGCTCTATGGGATCCGGGATGTGAAGAGTACTCGGGACAGAGACCAACCTAATGTCTCATCTG
CCTGCCTGGAGTTCAAGTGCAGTGGAATGCTGTATGACCAAGACCGTGTAGACCGCACATTAGTAAAGGT
TATCCCCCAGGGCAGCTGCCATCGAGCTAGTGTTAACTCTATGTTGCACGAGTACCTGGTCAACCACCTT
CCCCTGGCAGTCAACAATGACACCAGCGAGTATACTATGCTGGCACCCCTGGACCCTCTGGGCCACAATT
ACGGTATCTATACTGTTACTGATCAGGACCCTCGTACAGCTAAGGAGATTGCGCTCGGCCGGTGCTTTGA
TGGCACTTCCGATGGCTCCTCCAGAATCATGAAGAGCAATGTGGGAGTTGCCCTGACCTTTAACTGTGCA
GAAAGGCAGGTAGGCCGCCAGAGTGCCTTCCAGTACCTCCAAAGCACACCGGCCAGGTCCCCAGCTACAG
GCACTGTCCAAGGAAGAGTACCAGCCATGAGGCAACAACGGGCAAGCAGGGGTGGCCTACGCCGGCGTGG
AAGCATGGGCCCCTCTGAGATTTTCTGGTGTTGCTCAACAACCTCTGAGCAACTAAGTCTTGTGGTTCTT
AGTCCTTTCTGTCCATCTCATGTGACAGCTGTCGTGAGACTGATGCACAGACTGTCACTTGTTAATTTAA
ACATATCTGGTTTGGTGCAGTTTGTTTCTTTGTGCCTTTACTTACTGTCTCTGCCTCATGATGCTGATTG
CCACAGGGCCCCCACGATGACAAAACAAAGATTCTCCTCTTAA

Translation (1250 aa):
MAAIKTWVFSFLVLEVTTVLGRQTMLAQSVRRVQPVKRTPKTLAKPADSQESPGEWTTWFNIDHPGGQGD
YERLDAIRFYYGERVCARPLRLEARTTDWMPAGSTGQVVHGSPREGFWCLNREQRPGQNCSNYTVRFLCP
PGSLRGDAEHIWSSWSPWSKCSAACGHTGVQTRTRTCLAQTVSLCSEATEEGQLCMSQACTACDLTCPMG
QVNADCDACMCQDFMLHGAISLPGGGPAPGAAVYLLAKAPKMLTRTDSSGRFRVPGLCPDGKTILKITKT
KFAPIMITMPKTSLKSATINAEFVRAETPYIVMNPEMKARRAGQSVSLCCKATGKPSPDKYFWYHNNTLL
DPSLYKHESKLVLRNLQQDQAGEYFCKAQSDAGAVKSKVTQLTVIAHDETPCNPTPESYLIRLPHDCFQN
ASNSFYYDVGRCPIKTCAGQQDNGIRCRDAVENCCGISRTEEREIQCSGYTLPTKVAVECSCQRCAETRS
IVRGRVTAADNGEPMRFGHVYMGNNRVSMTGYKGTFTLHIPQDTERLVLTFVDRLQKFVNTTKVLPFNKK
GSAVFHEIKMLRQKEPITLEAMETNIIPLGEVIGEDPVAELEIPSKSFYRQNGEPFTGKVKASVTFLDPR
NISTATAAQSDLNFINDEGDTFPLRTYGMFSVDFRDEATSESLNAGKVKVHLDSTQVKMPEHVPAMKLWS
LNPDTGLWEEEGDFKFESQRRNKREERTFLVGNMEIRERRLFNLDVPESRRCFIKVRTYRSERFLPSEQI
QGVVVSVINLEPRTGFSSNPRAWGRFDSVITGPNGACLPAFCDDQSPDAYSVYVLASLSGEELEAVESSP
KFNPNAIGVPQPYLNKLKYRRTDHEDPRVKKTAFQISMAKPRPNSAEESNGPIYAFENLRACEEAPPSAA
HFRFYQIEGDRYDYNTVPFNEDDPMSWTEDYLAWWPKPMEFRACYIKVKIVGPLEVNVRSRNMGGTHRQT
VGKLYGIRDVKSTRDRDQPNVSSACLEFKCSGMLYDQDRVDRTLVKVIPQGSCHRASVNSMLHEYLVNHL
PLAVNNDTSEYTMLAPLDPLGHNYGIYTVTDQDPRTAKEIALGRCFDGTSDGSSRIMKSNVGVALTFNCA
ERQVGRQSAFQYLQSTPARSPATGTVQGRVPAMRQQRASRGGLRRRGSMGPSEIFWCCSTTSEQLSLVVL
SPFCPSHVTAVVRLMHRLSLVNLNISGLVQFVSLCLYLLSLPHDADCHRAPTMTKQRFSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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