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Report for CCDS22993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22993.1 Public Mus musculus 9 Or8b36 23 108 98 CCDS HistoryNCBI Gene:258414Re-query CCDS DB by CCDS ID:22993.1Re-query CCDS DB by GeneID:258414See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22993.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072974.1 ENSMUSP00000072741.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072974.1Link to Ensembl Protein Viewer:ENSMUSP00000072741.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000072974Re-query CCDS DB by Protein ID:ENSMUSP00000072741
Original member Current member NCBI NM_146419.2 NP_666531.1 Accepted alive Link to Nucleotide Sequence:NM_146419.2Link to Protein Sequence:NP_666531.1Re-query CCDS DB by Nucleotide ID:NM_146419Re-query CCDS DB by Protein ID:NP_666531Link to BLAST:NP_666531.1

Chromosomal Locations for CCDS 22993.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 38025808 38026737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGTATTAGAAAATTCCTCTTCAGTGAAAGAATTTATCCTGCTGGGCTTGACACAGCAACCAGAGCTCC
AA
ATGCCTCTCTTTTTCCTGTTCTTGGGAATCTACATTGTATCCATGGTGGGGAACCTGGGCTTGACTGT
T
CTGATTGTTTTGAATCCTCACCTGCACAACCCCATGTACTACTTTCTCTTCAACCTTTCCTTCACAGAT
CTC
TGCTACTCCACTGTCATAACCCCCAGAATGCTGGTGGGTTTTGTGAAGCAGAACACCATCTCTCATG
CT
GAGTGCATGACTCAACACTTTTTCTTTTGCTTCTTTGTTATTGATGAATGCTACATTTTGACAGCAGT
G
GCCTATGACAGATATGCTGCCATCTGTAAGCCTCTACTTTACCAAGTTACCATGTCTCATCAGGTTTGC
CTG
CTGATGACAGTTGGGGTGTATGTGATGGGATTTTTGGAAGCCATTGCACACACTGGTAGTATGGTAA
GC
CTGACCTTCTGTGATGGCAACATTATTAATCACTATGCATGTGACATACTTCCTCTCCTCAAACTCTC
C
TGCACAAGCACCACCATCAATGAGTTGGTGGTTTTCATTGTTGTGGGTGTCAATGTCATAGTTCCCACC
CTG
ACAATCTTTATTTCTTACACCTTGATCCTTTCCAACATCCTCAGCATCCATTCTGCAGAAGGTAGGT
CA
AAAGCCTTCAGTACCTGTGGCTCCCATGTGATTGCTGTTTCACTTTTCTTTGGAGCTGCAGCCTTCAT
G
TATCTTAAGCCTTCTAGTGCATCTGAGGATGATGATAAAGTATCTACTATCTTTTATACCATTGTGGGC
CCA
ATGCTGAATCCTTTCATCTACAGTCTAAGGAATAAGGATGTCTACCTTGCACTTAGAAAAACTTTGA
TG
AAAAGGAGTTTTACCTAA


Translation (309 aa):
MVLENSSSVKEFILLGLTQQPELQMPLFFLFLGIYIVSMVGNLGLTVLIVLNPHLHNPMYYFLFNLSFTD
L
CYSTVITPRMLVGFVKQNTISHAECMTQHFFFCFFVIDECYILTAVAYDRYAAICKPLLYQVTMSHQVC
L
LMTVGVYVMGFLEAIAHTGSMVSLTFCDGNIINHYACDILPLLKLSCTSTTINELVVFIVVGVNVIVPT
L
TIFISYTLILSNILSIHSAEGRSKAFSTCGSHVIAVSLFFGAAAFMYLKPSSASEDDDKVSTIFYTIVG
P
MLNPFIYSLRNKDVYLALRKTLMKRSFT




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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