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Report for CCDS22928.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22928.1 Public Mus musculus 9 Bbs9 23 108 98 CCDS HistoryNCBI Gene:319845Re-query CCDS DB by CCDS ID:22928.1Re-query CCDS DB by GeneID:319845See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22928.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039798.15 ENSMUSP00000043042.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039798.15Link to Ensembl Protein Viewer:ENSMUSP00000043042.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000039798Re-query CCDS DB by Protein ID:ENSMUSP00000043042
Original member Current member EBI ENSMUST00000150395.7 ENSMUSP00000116629.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150395.7Link to Ensembl Protein Viewer:ENSMUSP00000116629.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150395Re-query CCDS DB by Protein ID:ENSMUSP00000116629
Original member Current member EBI ENSMUST00000147712.7 ENSMUSP00000122058.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147712.7Link to Ensembl Protein Viewer:ENSMUSP00000122058.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000147712Re-query CCDS DB by Protein ID:ENSMUSP00000122058
Original member Current member NCBI NM_001360258.1 NP_001347187.1 Accepted alive Link to Nucleotide Sequence:NM_001360258.1Link to Protein Sequence:NP_001347187.1Re-query CCDS DB by Nucleotide ID:NM_001360258Re-query CCDS DB by Protein ID:NP_001347187Link to BLAST:NP_001347187.1
Original member Current member NCBI NM_178415.1 NP_848502.1 Accepted alive Link to Nucleotide Sequence:NM_178415.1Link to Protein Sequence:NP_848502.1Re-query CCDS DB by Nucleotide ID:NM_178415Re-query CCDS DB by Protein ID:NP_848502Link to BLAST:NP_848502.1
Original member Current member NCBI NM_181316.4 NP_851833.2 Accepted alive Link to Nucleotide Sequence:NM_181316.4Link to Protein Sequence:NP_851833.2Re-query CCDS DB by Nucleotide ID:NM_181316Re-query CCDS DB by Protein ID:NP_851833Link to BLAST:NP_851833.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347187.1 880 Q811G0-2 880 100% 0 0
NP_848502.1 880 Q811G0-2 880 100% 0 0
NP_851833.2 880 Q811G0-2 880 100% 0 0

Chromosomal Locations for CCDS 22928.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 22490829 22490940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22496709 22496859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22504045 22504109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22513980 22514093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22567705 22567879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22575111 22575195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22578637 22578820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22579464 22579593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22628942 22629120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22635611 22635687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22638730 22638783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22643745 22643847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22645964 22646068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22655225 22655365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22659050 22659145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22670785 22670957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22678912 22679064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22793751 22793933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22812321 22812543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22887581 22887688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22887862 22887893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2643 nt):
ATGTCCTTATTTAAAGCCCGTGACTGGTGGTCTACTGTGTTGGGAGAAAAAGAAGAATTTGACCAGGGCT
GCTTATGCTTGGCTGATGTGGACAACAGTGGGAACGGCCACGATAAAATCATTGTGGGCAGCTTCATGGG
CTACCTGAGAATCTTTAGTCCCCATTCTGTAAAAGCTGGAGGTGGGCCTCAGGCTGAAGATTTACTTCTA
GAAGTGCATCTGCGGGACCCAGTGCTGCAAGTGGAAGTCGGGAAGTTTGTCTCGGGCACCGAGATGCTTC
ATCTGGCCGTGCTGCACTCCCGGAAGCTCTGTGTCTACTCCGTCTCAGGGACATTGGGAAATGTGGAACA
TGGAAACCAATATCAGATAAAACTAATGTATGAGCACCATCTTCAGAGGACGGCCTGCAATATGACGTAT
GGACCCTTTGGTGGTGTAAAAGGTCGGGATTTAATTTGTATCCAGTCTCTGGATGGGATGCTGATGGTGT
TTGAGCAGGAAAGCTATGCGTTTGGGAGGTTTCTCCCTGGTTTTCTTCTGCCTGGCCCTCTTGCTTACAG
TCCCCGCACGGATTCCTTCATAACTGTGTCTTCTTGCAGACAAGTGGAAAGTTACAAGTACCAGGTACTT
GCCTTTGCCACAGATGCAGACAAGAAGCAGGAGATGGAACAGCAAAAACTTGGTTCTGGAAAGCGGCTAG
TTGTGGACTGGACTCTGAATATTGGCGAGCAAGCCCTTGATATCTGTATCTTCCCTTTGAACCAATCTGC
ATCTTCTGTTTTTGTTCTTGGTGAGAGAAACTTCTTTTGCCTAAAGGATAATGGGCAGATTCGATTCATG
AAGAAGCTCGGTTATAACCCCAGTTGTTTTCTACCGTACTGCTCAGTTTCTGAAGGTACAATAAATACTT
TGATTGGAAACCATAACCACATGCTGCATATTTACCAGGACGTGACACTGAAGTGGGCCACACAACTCCC
CCACGTCCCCGTGGCCGTCAGAGTAGGCTGTTTTCATGATTTGAAGGGAGTGATAGTGACTCTCAGTGAT
GACGGTCACCTGCAGTGCTCGTATCTGGGGACAGACCCTTCTTTGTTCCAGGCTCCAAAAGTTGAATCAA
GAGAGCTCAACTATGATGAACTTGATGTGGAATTGAAAGAACTTCAGAAAATCATCAAAGATGTAAAGTT
GCAAGGTGTTTGGCCCTTGACTGAACAGGAAGATGACTTGAAAGTCTCTGCTTCAGTGTCTTCTACCCTG
GATTCTGTGTCTCAAGCCACCAATGTGGAACCTGGAGCTGACTCTGTCCCGTCCATCACAGTGAAGATTA
CCCTGCAGAACCGAGTGGTGTTGCAGAAGGTCAAGCTGTCTATCTATGTGCAGCCTCCACTACAGTTGAC
TTGTGATCAGTTCACCTTTGACTTCACGGTTCCAGATATGACGAGTTCAGTAGCGTTTTCTGTGTACCTG
AAGAGAAACTACACACCATCCGAGTTAGAAGGAAATGCTGTTGTTTCTTACTCCAGACCGACAGGTATTC
CTCGGGTTGTCCAATGTAAATTTAGACTTCCTCTGAAACTGATTTGCCTACCTGGTCAGCCTTCAAAAAC
TGCAAGCCACAAACTAACTATAGACACCAACAAATCTCCTGTCAGTCTGCTCGGTCTCTTCCCAGACTTT
GCCAACCCATCAGATGACGACCAAGTGAATGTAATGGGCTTCCGTCTCCTAGGAGGCGCTCGAGTGACTC
TTCTTGCTTCCAGAACATCCCAACGATACCGCATTCAGAGCGAACAGTTTGAAGATCTCTGGCTCATAAC
CAATGAACTCATCCTCCGCCTTCAGGAACATTTTGAAAAACAGGGAACCAAAGACTTTTCGTGTTCTTTT
TCTGGGTGTGTGCCCCTTCAAGAATATTTTGAGTTGATTGATCATCATTTTGAGCTGCGGATAAATGGTA
AAAAATTGGAAGAACTTTTATCTGAAAGAGCTGTACAATTTCGGGCCATTCAGCGTCGGCTTCTGACAAG
ATTCAGAGACAAGACCCCTGCCCCACTGCAGCACCTGGACACCCTGCTGGACGGGACATACAAGCAGGTG
ATTGCTCTAGCAGATGCGATCGAGGAGAACCAGGACAGGCTGTTGCAGTCATTCTCAGGCCTGAAGAGTG
CCACCCATTTGCTGATCCTGCTAATCAGGCTGTGGCAGAGGCTGAGCGCTGACCAGACTGCTATTCTGGA
AGCAGCATTTCTGCCACTACAGGAAGACACGCAGGAACTGGGCTGGGAAGAAACCGTGGATGCTGCCATT
GCCTACCTTTTGAAAACCTGCCTGTCGAAGAGTTCCAAGGAGCAGGCTTTGAACCTCAGCAGCCAACTGA
ACATACCCAAAGATACCAGCCGGCTGAAGAAGCACATCACCCTGCTGTGTGATAGGTTAGCCAAAGGTGG
GCGTCTCTGCGTGAGCACAGATGCAGCGGCCCCGCAGGCCATGGTTGTGCCAGGTGGCTGTACTCCAATC
CCAGAGTCAGACCTAGAGGAAAGGTCACTAGATGACTCCACAGAGCTGTTTACCAACCACAAGCACCTCA
TGACCGAGCCCCCCATGCCTGAAGTCTCAGCCCGCCAAGGAGTTTTGGAATAG

Translation (880 aa):
MSLFKARDWWSTVLGEKEEFDQGCLCLADVDNSGNGHDKIIVGSFMGYLRIFSPHSVKAGGGPQAEDLLL
EVHLRDPVLQVEVGKFVSGTEMLHLAVLHSRKLCVYSVSGTLGNVEHGNQYQIKLMYEHHLQRTACNMTY
GPFGGVKGRDLICIQSLDGMLMVFEQESYAFGRFLPGFLLPGPLAYSPRTDSFITVSSCRQVESYKYQVL
AFATDADKKQEMEQQKLGSGKRLVVDWTLNIGEQALDICIFPLNQSASSVFVLGERNFFCLKDNGQIRFM
KKLGYNPSCFLPYCSVSEGTINTLIGNHNHMLHIYQDVTLKWATQLPHVPVAVRVGCFHDLKGVIVTLSD
DGHLQCSYLGTDPSLFQAPKVESRELNYDELDVELKELQKIIKDVKLQGVWPLTEQEDDLKVSASVSSTL
DSVSQATNVEPGADSVPSITVKITLQNRVVLQKVKLSIYVQPPLQLTCDQFTFDFTVPDMTSSVAFSVYL
KRNYTPSELEGNAVVSYSRPTGIPRVVQCKFRLPLKLICLPGQPSKTASHKLTIDTNKSPVSLLGLFPDF
ANPSDDDQVNVMGFRLLGGARVTLLASRTSQRYRIQSEQFEDLWLITNELILRLQEHFEKQGTKDFSCSF
SGCVPLQEYFELIDHHFELRINGKKLEELLSERAVQFRAIQRRLLTRFRDKTPAPLQHLDTLLDGTYKQV
IALADAIEENQDRLLQSFSGLKSATHLLILLIRLWQRLSADQTAILEAAFLPLQEDTQELGWEETVDAAI
AYLLKTCLSKSSKEQALNLSSQLNIPKDTSRLKKHITLLCDRLAKGGRLCVSTDAAAPQAMVVPGGCTPI
PESDLEERSLDDSTELFTNHKHLMTEPPMPEVSARQGVLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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