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Report for CCDS22631.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22631.1 Public Mus musculus 8 Slc7a6 23 108 98 CCDS HistoryNCBI Gene:330836Re-query CCDS DB by CCDS ID:22631.1Re-query CCDS DB by GeneID:330836See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22631.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034378.4 ENSMUSP00000034378.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034378.4Link to Ensembl Protein Viewer:ENSMUSP00000034378.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000034378Re-query CCDS DB by Protein ID:ENSMUSP00000034378
Original member Current member NCBI NM_001357381.1 NP_001344310.1 Accepted alive Link to Nucleotide Sequence:NM_001357381.1Link to Protein Sequence:NP_001344310.1Re-query CCDS DB by Nucleotide ID:NM_001357381Re-query CCDS DB by Protein ID:NP_001344310Link to BLAST:NP_001344310.1
Original member Current member NCBI NM_178798.4 NP_848913.1 Accepted alive Link to Nucleotide Sequence:NM_178798.4Link to Protein Sequence:NP_848913.1Re-query CCDS DB by Nucleotide ID:NM_178798Re-query CCDS DB by Protein ID:NP_848913Link to BLAST:NP_848913.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344310.1 515 Q8BGK6-1 515 100% 0 0
NP_848913.1 515 Q8BGK6-1 515 100% 0 0

Chromosomal Locations for CCDS 22631.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 106179138 106179660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106189617 106189742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106192339 106192483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106193151 106193274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106193493 106193596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106194421 106194517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106195362 106195511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106195853 106196036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106196544 106196638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGGAAGCACAGGAGCTTGGGAGCCCCACACCCACCTACCATCTTCTCCCCAAAGCCAACCAGCACACTG
TAAAAGAAGATGCCGGCTCACCATCTCAAGGGTCTCCAGAAACGATGCAGCTGAAGAAGGAGATCTCCTT
GCTGAACGGGGTCAGCCTGGTGGTGGGCAACATGATTGGCTCAGGGATCTTTGTCTCACCGAAGGGTGTC
CTCAAGTACACTGCTTCCTATGGGTTGTCACTTATAGTGTGGGCCATTGGTGGGCTCTTCTCTGTCGTGG
GTGCCCTTTGCTATGCAGAACTGGGGACCACCATCACCAAATCAGGGGCTAGCTATGCTTATATTCTAGA
GGCCTTCGGGGGCTTCATTGCCTTTATCCGTCTGTGGGTCTCACTTCTAATTGTTGAGCCCACCAGTCAG
GCCATCATCGCCATCACCTTTGCCAACTATATCATCAAGCCCTCCTTCCCCACCTGTGATCCTCCATATG
TGGCCTGCCGTCTCCTCGCTGCTGCCTGCGTATGTCTGCTGACATTTGTGAACTGTGCCTACGTCAAGTG
GGGCACACGAGTACAAGACACATTCACGTATGCCAAGGTCCTGGCACTCATTGCCATCATTATCATGGGC
CTTGTTAAACTGTGTCAGGGACACACTGAGCACTTTCAGGACGCCTTTAAAGGTTCCTCGTGGAATGTGG
GAGACCTCTCTCTTGCCCTGTACTCTGCCCTCTTCTCTTACTCAGGTTGGGACACCCTTAATTTTGTAAC
AGAAGAAATCAAAAACCCAGAAAGGAATTTGCCCTTGGCCATTGGGATTTCTATGCCAATTGTGACACTC
ATCTACATCCTGACCAACGTGGCCTATTACACAGTGCTGAACATTCAGGATGTCCATAAGAGTGACGCTG
TGGCTGTGACATTTGCTGACCAGACATTCGGCATGTTCAGTTGGACCATCCCCATTGCTGTTGCTCTGTC
CTGCTTCGGGGGCCTAAATGCATCCATCTTTGCTTCATCAAGGTTGTTTTTCGTGGGCTCTCGTGAGGGC
CACCTCCCGAACCTTCTGTCCATGATCCATATTGAGCGCTTTACACCCGTGCCTGCGTTACTGTTCAATT
GCACCATGACACTTATCTACCTCGTGGTGAAGGACGTCTTCCTGCTCATCAACTACTTCAGCTTCAGCTA
CTGGTTCTTCGTGGGCTTGTCTGTTGTTGGACAGCTCTACCTTCGCTGGAAAGAGCCTGACTGGCCTCGA
CCTCTCAAGCTGAGCCTCTTTTTTCCCATCGTGTTCTGCGTCTGCTCCTTGTTTCTGGTGGCCGTACCCC
TCTTCAGTGACACCATCAATTCCCTCATTGGCATTGGGATTGCCCTCTCTGGGGTCCCTGTCTACTTCTT
GGGTGTATACCTGCCAGAGTCCCGGAGACCACTCTTTATTAGGAATGTGCTGGCTACTGTCACCAGAGTC
ACCCAGAAGCTTTGCTTTTGCGTCTTGACTGAGCTAGATGTAACTGAAGAGAAAAATGTTGAGAGGAAAA
CTGACTAG

Translation (515 aa):
MEAQELGSPTPTYHLLPKANQHTVKEDAGSPSQGSPETMQLKKEISLLNGVSLVVGNMIGSGIFVSPKGV
LKYTASYGLSLIVWAIGGLFSVVGALCYAELGTTITKSGASYAYILEAFGGFIAFIRLWVSLLIVEPTSQ
AIIAITFANYIIKPSFPTCDPPYVACRLLAAACVCLLTFVNCAYVKWGTRVQDTFTYAKVLALIAIIIMG
LVKLCQGHTEHFQDAFKGSSWNVGDLSLALYSALFSYSGWDTLNFVTEEIKNPERNLPLAIGISMPIVTL
IYILTNVAYYTVLNIQDVHKSDAVAVTFADQTFGMFSWTIPIAVALSCFGGLNASIFASSRLFFVGSREG
HLPNLLSMIHIERFTPVPALLFNCTMTLIYLVVKDVFLLINYFSFSYWFFVGLSVVGQLYLRWKEPDWPR
PLKLSLFFPIVFCVCSLFLVAVPLFSDTINSLIGIGIALSGVPVYFLGVYLPESRRPLFIRNVLATVTRV
TQKLCFCVLTELDVTEEKNVERKTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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