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Report for CCDS22566.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22566.1 Public Mus musculus 8 Setd6 23 108 98 CCDS HistoryNCBI Gene:66083Re-query CCDS DB by CCDS ID:22566.1Re-query CCDS DB by GeneID:66083See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22566.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034096.5 ENSMUSP00000034096.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034096.5Link to Ensembl Protein Viewer:ENSMUSP00000034096.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034096Re-query CCDS DB by Protein ID:ENSMUSP00000034096
Original member Current member NCBI NM_001035123.4 NP_001030295.1 Accepted alive Link to Nucleotide Sequence:NM_001035123.4Link to Protein Sequence:NP_001030295.1Re-query CCDS DB by Nucleotide ID:NM_001035123Re-query CCDS DB by Protein ID:NP_001030295Link to BLAST:NP_001030295.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001030295.1 473 Q9CWY3 473 100% 0 0

Chromosomal Locations for CCDS 22566.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 95715937 95716270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95716353 95716494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95716607 95716801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95716921 95717041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95717921 95718101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95718193 95718335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95718476 95718781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGGCGGCCCCCGCCAAGCGCGCGCGGGTAAGTGGCGGGTCGCCCCTCGTCGCGCCCTGTCCCTCCCCGA
GAGCTGCCCGCGCGCCCCTGCCGCTCCCTGCGGGGTCCAGCGGCGGCGAGCCCGAGGGCGACGCGGTGGC
CGGCTTCCTGCGCTGGTGCAGGCGAGTGGGGCTGGAGCTGAGTCCTAAGGTGACGGTGAGCCGGCAGGGC
ACGGTGGCCGGCTATGGCATGGTGGCGCGGGAGAGCGTGCGGGCCGGGGAGCTCCTTTTCGCAGTGCCGC
GGTCCGCGCTTCTGTCCCCCCACACCTGTTCCATCAGCGGCCTGCTGGAGCGAGAGCGAGGCGCGCTGCA
GAGCCTGTCTGGGTGGGTGCCGCTGCTGCTGGCGCTGCTCCACGAGCTCCAGGCCCCAGCATCACCCTGG
AGCCCTTACTTCGCGCTCTGGCCAGAGCTGGGGCGTTTGGAGCATCCCATGTTTTGGCCGGAGGAAGAGC
GGTTGCGACTCCTAAAGGGTACAGGTGTCCCCGAAGCCGTGGAGAAGGATTTGGTGAACATCCGTAGCGA
ATACTATTCCATCGTCCTGCCCTTCATGGAGGCTCACTCGGATCTCTTCAGCCCCTCTGTTCGCTCCCTG
GAACTCTATCAGCAGCTCGTGGCCCTCGTGATGGCTTATAGCTTTCAAGAACCGCTGGAGGAAGATGATG
ATGAAAAGGAGCCCAACTCACCCTTGATGGTGCCTGCTGCAGACATACTAAACCACATAGCCAATCATAA
TGCCAATCTAGAGTACTCGGCAGATTATCTCCGGATGGTGGCTACTCAGCCCATTCTTGAAGGTCATGAA
ATCTTCAACACATATGGGCAAATGGCTAACTGGCAACTGATTCATATGTATGGTTTTGCTGAGCCCTATC
CTAACAACACAGACGACACGGCTGACATTCAGATGGTGACAGTCCGAGATGCTGCACTGCAGGGAACAAA
GGATGAAACTGAAAAGCTGCTCGTGTGTGAACGCTGGGATTTCCTGTGCAAACAGGAGATGGTAGGGGAA
GAGGGAGCCTTTGTGATAGGTTGTGAGGAGGTGCTGACTGAAGAGGAGCTAGCCACCACACTGAAGGTAC
TGTGCATGCCTGCTGAGGAGTTCAGAGACTATAAAGAGCGGGCTGGATGGGGAGAGGAGGAGACAGAAGA
CGACAGTTTGGCAATCACAGATATCCCCAAGCTCCAAGAATCATGGAAACGGCTTCTTCGAAACAGTGTT
CTGTTGACCCTACAGACCTACACCACAGACTTAAAAACAGACCAGGACTTACTCAGTAATAAGGAGGCCT
ATGCCACGCTGAGCTGGCGCGAACAACAAGCCTTACAGGTCCGCTATGGTCAGAAGATGATCTTACATCG
GGTGTTGGAACTCACAAATTAA

Translation (473 aa):
MAAPAKRARVSGGSPLVAPCPSPRAARAPLPLPAGSSGGEPEGDAVAGFLRWCRRVGLELSPKVTVSRQG
TVAGYGMVARESVRAGELLFAVPRSALLSPHTCSISGLLERERGALQSLSGWVPLLLALLHELQAPASPW
SPYFALWPELGRLEHPMFWPEEERLRLLKGTGVPEAVEKDLVNIRSEYYSIVLPFMEAHSDLFSPSVRSL
ELYQQLVALVMAYSFQEPLEEDDDEKEPNSPLMVPAADILNHIANHNANLEYSADYLRMVATQPILEGHE
IFNTYGQMANWQLIHMYGFAEPYPNNTDDTADIQMVTVRDAALQGTKDETEKLLVCERWDFLCKQEMVGE
EGAFVIGCEEVLTEEELATTLKVLCMPAEEFRDYKERAGWGEEETEDDSLAITDIPKLQESWKRLLRNSV
LLTLQTYTTDLKTDQDLLSNKEAYATLSWREQQALQVRYGQKMILHRVLELTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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