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Report for CCDS21749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21749.1 Public Mus musculus 7 Irag1 23 108 98 CCDS HistoryNCBI Gene:17540Re-query CCDS DB by CCDS ID:21749.1Re-query CCDS DB by GeneID:17540See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21749.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005751.12 ENSMUSP00000005751.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005751.12Link to Ensembl Protein Viewer:ENSMUSP00000005751.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000005751Re-query CCDS DB by Protein ID:ENSMUSP00000005751
Original member Current member NCBI NM_194464.3 NP_919446.2 Accepted alive Link to Nucleotide Sequence:NM_194464.3Link to Protein Sequence:NP_919446.2Re-query CCDS DB by Nucleotide ID:NM_194464Re-query CCDS DB by Protein ID:NP_919446Link to BLAST:NP_919446.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_919446.2 856 Q9WUX5-2 856 100% 0 0

Chromosomal Locations for CCDS 21749.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 110871359 110871602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110876839 110876976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110878142 110878261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110885756 110885820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110887941 110888048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110888534 110888583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110895794 110895935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110898906 110899037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110899674 110899814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110902253 110902283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110905427 110905550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110921314 110921392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110923461 110924072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110924312 110924359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110924535 110924587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110925255 110925332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110926343 110926516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110927801 110927871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110929478 110929578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110945833 110945892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2571 nt):
ATGCCCCACATTCCTGAGGATGAGGAGCCCCCCGGAGAGCCACAGGCAGCCCAGACCCAAGACTCTCCCT
CT
GCAGGACCATTTCCCAGCCCTCCCACAATCGTCCTGACGGGGGATGCCAGTTCACCTGAAGGAGAGAC
T
GACAAAAACCTAGTCAACAGGGCTCCCAGCCCTCACCGGAGGCTTTCCCACCGACACCTGAAGGTCTCC
ACT
GCTTCGCTGACTTCTGTGGACCCCTCGGGGCATGTCATTGACCTGGTGAATGACCAGCTGCCGGACA
TC
AGCATCTCAGAAGAGGACAAGAAAAAAAACCTGGCACTTCTGGAAGAAGCCAAGTTGGTGAGTGAGCG
G
TTCCTGACCCGCCGTGGGAGGAAATCAAGGAGCAGCCTCGGAGACTCCCCATCAGCTGTTTCTCCAAAC
CTC
AGCTCTGGGGCTTCTCCTGCATCCTCCAGGAGCTGCTCCCTCACCATCTCCACATCACCAGGTTTGG
AC
ATATGCAGTGGCCCTCAGTCCCCTCTGCCAGGAGCACCACCACAGCAAAAGGGACATGAGGACGGGGT
C
TCCTCGCCTTGCCCCGGAGAGCCTAATGTCTCCAAAGGGCTAGCTGACCTGAAGCAGAATGACCAGAGA
AAA
GTGTCTCAAGGCAGACTGGCTCCTCGCTCTCCCACAGTGGAGAAAACCAAGGAACTTACAGTAGAAC
AA
AAGGAAAACTTTGATCCCCTTCAGCACGTGGAGGCCACGCCCATGGCTCAGGCTTCTGGAGCAAGCAT
C
AGTGGGAAAATGGCTCTGAACAGCCCCCAGCCTGGCCCTGCTGAGATGGAGCTGGGGAGGCAGCTCCTG
AAG
ACAGCCCGGGAAGGCAACCCTCTGCCCAGAACCACAGCCCAGGGCTCAGGAGGAACGGTCTCCCCAC
AT
TCCCTGGGGCAGGGCTCTGCTGGAGAGCCTATGGGACCCAAGGCTGGCTCCAAGGCTGAGCTGAGGTC
C
CCTGTGTCCCGGCCCCCCCTGATTCGGGGGGTCTCCTGGGACAGCAGCCCTGAAGAACCCGGTCCCCTG
CTG
CAGAAGGTGCTCGCTAAGCTGCCCCTGGCAGAGGAAGAGAAGCGGTTTCCAGGCAAAGCCAAGCCAG
CC
AAGCCACCTGGGCTCAAAGACTTCCAGATACAAGTGCAGCCGGTGCGCATGCAGAAGCTGACCAAGCT
C
CGGGAGGAACACATCCTGATGAGAAACCAGAACCTGGTGGGGTTCAAGCTCCCTGAACTGAGTGAGGCC
GCG
GAGCAGGACAAAGGAGTCTCACCTGAACTCGCCCCAGCAGCTGAGGAAGAAGAGTCCAAGAGTGGTC
TG
GATGTGATGCCCAACATTTCTGACATATTGCTGCGCAAACTTAGGGTTCACAAGTCACTCACTGGAAG
C
GCCCCTCCACTCACTGAAAAGGAAGTTGAGAACGTGTTTGTACAACTGTCCTTGGCCTTTAGAAATGAC
AGC
TACACCTTGGAGTCTAGAATTAACCAGGCTGAAAGGGAGCGCAACCTGACAGAAGAGAACACGGAGA
AG
GAACTGGAAAACTTCAAAGCCTCCATAACGTCCTCAGCAAACATCTGGTACCACTGCGAACACCGGGA
G
ACCTATCAGAAACTTCTGGAAGACATCGCCGTCTTGCATCGTCTGGCTGCCCGCCTCTCCAGTCGGGCT
GAA
GTGGTGGGTGCTGTTCGCCAGGAAAAGCGCATGTCAAAGGCCACGGAAGTGATGATGCAGTATGTGG
AG
AATCTGAAGAGAACGTATGAGAAGGACCATGCTGAGCTCATGGAATTTAAGAAACTTGCAAATCAGAA
T
TCCAGTCGCAGCTGTGGGCCCTCTGAAGACGGGGTTCCTCGAACGGCGCGATCTATGTCCCTCACAATG
GGA
AAGAACATGCCCCGCCGGAGGGTCAGCGTTGCTGTGGTTCCCAAGTTTAATGCCCTGAACCTGCCTG
GC
CAAGCCCCGAGCTCTTCACCCATGCCTTCCCTACCAGCTCTGTCTGAATCGTCCAATGGGAAGAGCAG
C
ATCTCCGTCTCCCCAGCGCTGCCTGCACTTTTGGAAAATGGAAAGACAAATGCAGAGGCTAACTGCGAA
GTG
GGTGCCCCTGTGCCACTCCCAAGCTGTCTGGAGGAGACGAGCCAGGAGACCAAGGCCAAGGCAGAGG
AA
GAAGCCTACAGCAAAGGATACCAGGAAGGGGTAAAGAAGACCGAAGAACTTCAAGACCTGAAGGAGGA
G
GAGGAGGAAGAACAGAAGACGGAGAGTCCCGAGGAACCAGAAGAGGTAGAAGAAACCCAGGAGGACGAG
AAG
GACCAGGGAAGCAGCAAACTTGAAGAACTGGTCCACTTCCTACAAGTCATGTATCCTAAATTGTGTC
AA
CACTGGCAAGTGATCTGGATGATGGCCGCAGTGATGCTGGTCTTGAGTGTTGTTCTCGGGCTGTACAG
T
TCCTATAACTCCTGCACAGAGGAGGCCGATGGGCCCCCTGGGAGATCCACCTGCTCTGCAGCCCAGCGG
GAC
TCCTGGTGGAGCTCCGGACTCCAGCAAGAGCTGCCAGCAGAGCAGTAG


Translation (856 aa):
MPHIPEDEEPPGEPQAAQTQDSPSAGPFPSPPTIVLTGDASSPEGETDKNLVNRAPSPHRRLSHRHLKVS
T
ASLTSV
DPSGHVIDLVNDQLPDISISEEDKKKNLALLEEAKLVSERFLTRRGRKSRSSLGDSPSAVSPN
L
SSGASPASSRSCSLTISTSP
GLDICSGPQSPLPGAPPQQKGHEDGVSSPCPGEPNVSKGLADLKQNDQR
K
VSQGRLAPRSPTVEKTKELTVEQKENFDPLQHVEATPMAQASGASISGKMALNSPQPGPAEMELGRQLL
K
TAREGNPLPRTTAQGSGGTVSPHSLGQGSAGEPMGPKAGSKAELRSPVSRPPLIRGVSWDSSPEEPGPL
L
QKVLAKLPLAEEEKRFPGKAKPAKPPGLKDFQIQVQPVRMQKLTKLRE
EHILMRNQNLVGFKLPELSEA
A
EQDK
GVSPELAPAAEEEESKSGLDVMPNISDILLRKLRVHKSLTGSAPPLTEKEVENVFVQLSLAFRND
S
YTLESRINQAERERNLTEENTEKELENFKASIT
SSANIWYHCEHRETYQKLLEDIAVLHRLAARLSSRA
E
VVGAVRQ
EKRMSKATEVMMQYVENLKRTYEKDHAELMEFKKLANQNSSRSCGPSEDGVPRTARSMSLTM
G
K
NMPRRRVSVAVVPKFNALNLPGQAPSSSPMPSLPALSESSNGKSSISVSPALPALLENGKTNAEANCE
V
GAPVPLPSCLEETSQETKAKAEEEAYSK
GYQEGVKKTEELQDLKEEEEEEQKTESPEEPEEVEETQEDE
K
DQGS
SKLEELVHFLQVMYPKLCQHWQVIWMMAAVMLVLSVVLGLYSSYNSCTEEADGPPGRSTCSAAQR
D
SWWSSGLQQELPAEQ




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser