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Report for CCDS20840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20840.1 Public Mus musculus 7 Crx 23 108 98 CCDS HistoryNCBI Gene:12951Re-query CCDS DB by CCDS ID:20840.1Re-query CCDS DB by GeneID:12951See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20840.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044434.12 ENSMUSP00000043436.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044434.12Link to Ensembl Protein Viewer:ENSMUSP00000043436.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000044434Re-query CCDS DB by Protein ID:ENSMUSP00000043436
Original member Current member NCBI NM_007770.4 NP_031796.1 Accepted alive Link to Nucleotide Sequence:NM_007770.4Link to Protein Sequence:NP_031796.1Re-query CCDS DB by Nucleotide ID:NM_007770Re-query CCDS DB by Protein ID:NP_031796Link to BLAST:NP_031796.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031796.1 299 O54751 299 100% 0 0

Chromosomal Locations for CCDS 20840.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 15867780 15868427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15869343 15869494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15871144 15871243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGATGGCATATATGAACCCGGGGCCTCACTATTCAGTCAATGCCTTGGCTCTGAGTGGCCCCAATGTGG
ACCTGATGCACCAGGCTGTCCCATACTCAAGTGCCCCTAGGAAGCAGCGGCGGGAGCGGACCACATTCAC
CAGGAGCCAGCTGGAGGAGCTGGAGGCCCTGTTTGCCAAGACCCAGTACCCGGATGTGTATGCACGTGAG
GAGGTTGCTCTTAAGATCAATCTGCCTGAGTCCAGGGTCCAGGTCTGGTTCAAGAATCGTAGGGCGAAAT
GCAGACAGCAGCGACAGCAGCAGAAACAGCAACAGCAGCCCCCGGGGGCACAGACCAAGGCTCGTCCTGC
GAAGAGGAAGGCAGGGACATCCCCGAGACCCTCTACAGATGTTTGTACAGATCCTTTGGGCATCTCAGAT
TCTTACAGCCCATCTCTGCCTGGCCCCTCAGGTTCACCTACCACAGCAGTGGCCACCGTGTCCATTTGGA
GTCCAGCCTCAGAGGCTCCTTTGCCTGAGGCCCAGAGAGCCGGCCTAGTGGCTTCTGGGCCCTCTCTCAC
CTCAGCCCCTTATGCCATGACCTATGCCCCGGCTTCTGCTTTCTGTTCTTCCCCTTCAGCTTATGCATCT
CCAAGTTCCTATTTCAGTGGGTTGGATCCCTACCTTTCGCCCATGGTGCCCCAACTTGGGGGTCCGGCTC
TCAGCCCCCTCTCAGGCCCCTCTGTGGGGCCATCCCTGGCCCAGTCCCCCACCTCCTTGTCAGGCCAGAG
CTATAGCACCTACAGTCCTGTGGACAGCCTGGAATTCAAGGACCCCACAGGCACCTGGAAATTTACCTAC
AATCCCATGGACCCTCTGGACTACAAAGATCAGAGTGCCTGGAAGTTTCAGATCTTGTAG

Translation (299 aa):
MMAYMNPGPHYSVNALALSGPNVDLMHQAVPYSSAPRKQRRERTTFTRSQLEELEALFAKTQYPDVYARE
EVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGAQTKARPAKRKAGTSPRPSTDVCTDPLGISD
SYSPSLPGPSGSPTTAVATVSIWSPASEAPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYAS
PSSYFSGLDPYLSPMVPQLGGPALSPLSGPSVGPSLAQSPTSLSGQSYSTYSPVDSLEFKDPTGTWKFTY
NPMDPLDYKDQSAWKFQIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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