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Report for CCDS2078.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2078.1 Public Homo sapiens 2 LIMS1 24 110 108 CCDS HistoryNCBI Gene:3987Re-query CCDS DB by CCDS ID:2078.1Re-query CCDS DB by GeneID:3987See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2078.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332345.10 ENSP00000331775.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000332345.10Link to Ensembl Protein Viewer:ENSP00000331775.6Re-query CCDS DB by Nucleotide ID:ENST00000332345Re-query CCDS DB by Protein ID:ENSP00000331775
Original member Current member EBI ENST00000393310.5 ENSP00000376987.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393310.5Link to Ensembl Protein Viewer:ENSP00000376987.1Re-query CCDS DB by Nucleotide ID:ENST00000393310Re-query CCDS DB by Protein ID:ENSP00000376987
Original member Current member EBI ENST00000695518.1 ENSP00000511981.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695518.1Link to Ensembl Protein Viewer:ENSP00000511981.1Re-query CCDS DB by Nucleotide ID:ENST00000695518Re-query CCDS DB by Protein ID:ENSP00000511981
Original member Current member EBI ENST00000695521.1 ENSP00000511984.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695521.1Link to Ensembl Protein Viewer:ENSP00000511984.1Re-query CCDS DB by Nucleotide ID:ENST00000695521Re-query CCDS DB by Protein ID:ENSP00000511984
Original member Current member NCBI NM_001193488.2 NP_001180417.1 Accepted alive Link to Nucleotide Sequence:NM_001193488.2Link to Protein Sequence:NP_001180417.1Re-query CCDS DB by Nucleotide ID:NM_001193488Re-query CCDS DB by Protein ID:NP_001180417Link to BLAST:NP_001180417.1
Original member Current member NCBI NM_001371498.1 NP_001358427.1 Accepted alive Link to Nucleotide Sequence:NM_001371498.1Link to Protein Sequence:NP_001358427.1Re-query CCDS DB by Nucleotide ID:NM_001371498Re-query CCDS DB by Protein ID:NP_001358427Link to BLAST:NP_001358427.1
Original member Current member NCBI NM_004987.6 NP_004978.2 Accepted alive Link to Nucleotide Sequence:NM_004987.6Link to Protein Sequence:NP_004978.2Re-query CCDS DB by Nucleotide ID:NM_004987Re-query CCDS DB by Protein ID:NP_004978Link to BLAST:NP_004978.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180417.1 325 P48059-1 325 100% 0 0
NP_001358427.1 325 P48059-1 325 100% 0 0
NP_004978.2 325 P48059-1 325 100% 0 0

Chromosomal Locations for CCDS 2078.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 108659609 108659764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108670781 108670847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108672325 108672445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108672880 108673029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108675878 108676028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108676606 108676698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108677979 108678027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108680695 108680770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108683885 108683999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGGCCAACGCCCTGGCCAGCGCCACTTGCGAGCGCTGCAAGGGCGGCTTTGCGCCCGCTGAGAAGATCG
TG
AACAGTAATGGGGAGCTGTACCATGAGCAGTGTTTCGTGTGCGCTCAGTGCTTCCAGCAGTTCCCAGA
A
GGACTCTTCTATGAGTTTGAAGGAAGAAAGTACTGTGAACATGACTTTCAGATGCTCTTTGCCCCTTGC
TGT
CATCAGTGTGGTGAATTCATCATTGGCCGAGTTATCAAAGCCATGAATAACAGCTGGCATCCGGAGT
GC
TTCCGCTGTGACCTCTGCCAGGAAGTTCTGGCAGATATCGGGTTTGTCAAGAATGCTGGGAGACACCT
G
TGTCGCCCCTGTCATAATCGTGAGAAAGCCAGAGGCCTTGGGAAATACATCTGCCAGAAATGCCATGCT
ATC
ATCGATGAGCAGCCTCTGATATTCAAGAACGACCCCTACCATCCAGACCATTTCAACTGCGCCAACT
GC
GGGAAGGAGCTGACTGCCGATGCACGGGAGCTGAAAGGGGAGCTATACTGCCTCCCATGCCATGATAA
A
ATGGGGGTCCCCATCTGTGGTGCTTGCCGACGGCCCATCGAAGGGCGCGTGGTGAACGCTATGGGCAAG
CAG
TGGCATGTGGAGCATTTTGTTTGTGCCAAGTGTGAGAAACCCTTTCTTGGACATCGCCATTATGAGA
GG
AAAGGCCTGGCATATTGTGAAACTCACTATAACCAGCTATTTGGTGATGTTTGCTTCCACTGCAATCG
T
GTTATAGAAGGTGATGTGGTCTCTGCTCTTAATAAGGCCTGGTGCGTGAACTGCTTTGCCTGTTCTACC
TGC
AACACTAAATTAACACTCAAGAATAAGTTTGTGGAGTTTGACATGAAGCCAGTCTGTAAGAAGTGCT
AT
GAGAAATTTCCATTGGAGCTGAAGAAAAGACTTAAGAAACTAGCTGAGACCTTAGGAAGGAAATAA


Translation (325 aa):
MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPC
C
HQC
GEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHA
I
IDEQPLIFKNDPYHPDHFNCANC
GKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGK
Q
WHVE
HFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACST
C
NTKLTL
KNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser