NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20243.1 Public Mus musculus 6 Elmod3 23 108 98 CCDS HistoryNCBI Gene:232089Re-query CCDS DB by CCDS ID:20243.1Re-query CCDS DB by GeneID:232089See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20243.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070990.7 ENSMUSP00000067768.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070990.7Link to Ensembl Protein Viewer:ENSMUSP00000067768.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000070990Re-query CCDS DB by Protein ID:ENSMUSP00000067768
Original member Current member EBI ENSMUST00000114069.7 ENSMUSP00000109703.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114069.7Link to Ensembl Protein Viewer:ENSMUSP00000109703.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114069Re-query CCDS DB by Protein ID:ENSMUSP00000109703
Original member Current member NCBI NM_001253692.1 NP_001240621.1 Accepted alive Link to Nucleotide Sequence:NM_001253692.1Link to Protein Sequence:NP_001240621.1Re-query CCDS DB by Nucleotide ID:NM_001253692Re-query CCDS DB by Protein ID:NP_001240621Link to BLAST:NP_001240621.1
Original member Current member NCBI NM_001364553.1 NP_001351482.1 Accepted alive Link to Nucleotide Sequence:NM_001364553.1Link to Protein Sequence:NP_001351482.1Re-query CCDS DB by Nucleotide ID:NM_001364553Re-query CCDS DB by Protein ID:NP_001351482Link to BLAST:NP_001351482.1
Original member Current member NCBI NM_001364554.1 NP_001351483.1 Accepted alive Link to Nucleotide Sequence:NM_001364554.1Link to Protein Sequence:NP_001351483.1Re-query CCDS DB by Nucleotide ID:NM_001364554Re-query CCDS DB by Protein ID:NP_001351483Link to BLAST:NP_001351483.1
Original member Current member NCBI NM_144917.5 NP_659166.1 Accepted alive Link to Nucleotide Sequence:NM_144917.5Link to Protein Sequence:NP_659166.1Re-query CCDS DB by Nucleotide ID:NM_144917Re-query CCDS DB by Protein ID:NP_659166Link to BLAST:NP_659166.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240621.1 381 Q91YP6-1 381 100% 0 0
NP_001351482.1 381 Q91YP6-1 381 100% 0 0
NP_001351483.1 381 Q91YP6-1 381 100% 0 0
NP_659166.1 381 Q91YP6-1 381 100% 0 0

Chromosomal Locations for CCDS 20243.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 72566661 72566863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72568815 72568942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72569261 72569337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72575641 72575771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72577254 72577376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72577565 72577688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72579624 72579715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72580301 72580369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72586445 72586514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72587611 72587685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72594740 72594793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGAGTGAAACATCTTGCTCTTTTTTTATTGAGAAAGAATTTCAAGATGGGCAGCTAGAAAATGTCTCTG
CTGGGCTCTCTTCATCGTACAAGGACAAGGGTGCACTCATGGCTTTCAGAGGAATTCCTATCTCCGAGCT
GACGAACCATGGCATTCTCCAGGCCCTGACGGCAGAAACCAATGGGTGGCAGCCAGGTGTTGTGAGTGAA
GAGGTCCTCAGAGCCCAGGAAGAGTGGGAAGTGGTGGACACCATCCATCCAGACATAGAGAGTGGAGTCC
ACTGCCAGCAGCCTGGCCAGCTCATCTCCTTCAACGAGGCCCTGGAGCACTTCCAGAGTGTGGACCTTTC
CTCTTTCAAGAAAAGAATCCAGCCCACTATTCAAAGGACTGGGCTCGCCGCCCTCCGGCATTGCCTTTTC
GGGCCGCCAAAGCTGCACCAGGGTCTTCGGGAAGAAAGAGACTTGGTTCTCACCATTGCTCAGTGTGGCC
TGGACAGCCAAAACCCAACGCATGGCCGAGTGCTCCAGACCATCTACAAGAAGCTGACTGGCTCCAAGTT
CGACTGTGCCCTTCACGGAGACCATTGGGAAGACCTGGGCTTCCAGGGAGCAAACCCAGCCACAGACCTC
CGGGGGGCAGGCTTCCTGGCCCTCCTGCACCTACTCTACCTGGTCATGGACTCAAAGACGTTTCTGATGG
CCCAGGAGATCTTCCGCCTGTCTCATCACCATATCCAGCAATTCCCCTTCTGTTTGATGTCTGTGAACAT
CACCCGCATTGCCATCCAGGCCTTGAGAGAGGAGTGTCTCTCCAGGGAGTGTAATCGGCGGCAGAAGGTC
ATCCCGGTGGTGAACAGCTTCTACGCGGCTACTTTCCTTCATCTGGCTCGCGTGTGGAGGACCCAGCAGA
AGACTATTTTAGACTCAGGCTTTGTCCTCAAAGACTTGGAAGCGTTGGCCAAGAAGAGCCCAAAACGACT
GCTCAAGACCCTGGATGACTACCTCGCCCAGGTGTCAAAGGGACAGACCTCCTTGTTGGAGGCACACAAG
CGCCCTGGATCACAGGGACCTCACTCCAGGGATCTCACTTTCACAGGCGTGTGTGACCTGCAGTCTCACT
CATTCGAGAGTGCAGGGTTGATCTGA

Translation (381 aa):
MSETSCSFFIEKEFQDGQLENVSAGLSSSYKDKGALMAFRGIPISELTNHGILQALTAETNGWQPGVVSE
EVLRAQEEWEVVDTIHPDIESGVHCQQPGQLISFNEALEHFQSVDLSSFKKRIQPTIQRTGLAALRHCLF
GPPKLHQGLREERDLVLTIAQCGLDSQNPTHGRVLQTIYKKLTGSKFDCALHGDHWEDLGFQGANPATDL
RGAGFLALLHLLYLVMDSKTFLMAQEIFRLSHHHIQQFPFCLMSVNITRIAIQALREECLSRECNRRQKV
IPVVNSFYAATFLHLARVWRTQQKTILDSGFVLKDLEALAKKSPKRLLKTLDDYLAQVSKGQTSLLEAHK
RPGSQGPHSRDLTFTGVCDLQSHSFESAGLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH