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Report for CCDS20185.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20185.1 Public Mus musculus 6 Lancl2 23 108 98 CCDS HistoryNCBI Gene:71835Re-query CCDS DB by CCDS ID:20185.1Re-query CCDS DB by GeneID:71835See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20185.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050077.14 ENSMUSP00000052146.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050077.14Link to Ensembl Protein Viewer:ENSMUSP00000052146.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000050077Re-query CCDS DB by Protein ID:ENSMUSP00000052146
Original member Current member EBI ENSMUST00000072954.7 ENSMUSP00000072723.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072954.7Link to Ensembl Protein Viewer:ENSMUSP00000072723.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000072954Re-query CCDS DB by Protein ID:ENSMUSP00000072723
Original member Current member NCBI NM_133737.2 NP_598498.1 Accepted alive Link to Nucleotide Sequence:NM_133737.2Link to Protein Sequence:NP_598498.1Re-query CCDS DB by Nucleotide ID:NM_133737Re-query CCDS DB by Protein ID:NP_598498Link to BLAST:NP_598498.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598498.1 450 Q9JJK2 450 100% 0 0

Chromosomal Locations for CCDS 20185.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 57703060 57703263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57712988 57713105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57722497 57722704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57723489 57723636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57724546 57724692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57726417 57726599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57732196 57732372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57734017 57734089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57737656 57737750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGGGCGAGACCATGTCAAAGAGACTCAAGTTCCACCTAGGAGAGGCGGAGATGGAGGAGCGGTCGTTCC
CC
AATCCCTTCCCAGACTATGAAGCCGCCGCCTCCGCCGCAGGGCTCGCCGCTGGAAGTGCGGAGGAAAC
C
GGCCGTGTCTGCCCTCTCCCCACCACGGAAGACCCGGGCCTCCCTTTCCACCCTAACGGGAAGATTGTT
CCC
AACTTCATAAAGCGTATCCAGACCAAAATCAAAGATCTTCTGCAGCAGATGGAGGAAGGACTGAAGA
CA
GCGGACCCTCATGACTGCTCTGCATATACTGGTTGGACAGGCATAGCACTTTTGTACCTGCAGCTGTA
C
CGGGTCACTGGTGACCAGACCTACCTGCTTCGATCCCTGGATTACGTGAAGAGAACACTCCGAAATTTG
AGT
GGTCGCAGAGTCACTTTCCTTTGTGGAGATGCTGGGCCCCTTGCTGTGGGAGCTGTGATATATCATA
AA
CTCAAAAGTGAATGTGAGTCCCAGGAATGCATCACAAAACTTCTACAGATGCATAGAACTATTGTCTG
T
CAAGAGTCAGAGCTTCCTGATGAACTGCTGTATGGACGAGCAGGATACCTGTATGCCTTACTGTACCTG
AAC
ACAGAGATTGGCCCTGGCACTGTTGGTGAGACAGCTATTAAAGAGGTAGTCAGTGCTATTATTGAGT
CG
GGAAAGAGTCTATCAAGGGAAGAAAGGAAATCTGAGCGCTGCCCCCTGCTCTATCAGTGGCACAGAAA
A
CAATATGTTGGAGCAGCCCATGGTATGGCTGGCATCTACTACATGCTAATGCAGCCAGAAGCAAAAGTG
GAC
CAAGAAACCTTAACCGAAATGGTGAAACCCAGCATTGATTATGTGCGCCATAAAAAATTCCGATCTG
GA
AATTATCCATCATCATTAAGCAATGAAACAGATCGATTGGTCCACTGGTGCCATGGTGCTCCAGGAGT
C
ATCCACGTGCTCTTACAGGCATACCAGGTTTTTAAGGAGGAAAAATACTTGAAAGAGGCCATGGAGTGT
AGC
GATGTGATTTGGCAGCGAGGTCTGCTCCGGAAAGGTTATGGAATCTGCCATGGAACCTCTGGCAATG
GC
TATTCCTTTTTGTCCCTTTATCGCCTGACGCAGGATAAGAAGTATCTCTATCGAGCTTGTAAGTTTGC
A
GAGTGGTGTCTAGATTACGGAGCACATGGATGCCGCATTCCTGACAGACCTTATTCCCTCTTTGAAGGT
ATG
GCTGGTGCTGTTCACTTCCTTTCTGACATCTTGGTACCAGAGACAGCACGGTTTCCAGCATTTGAAC
TT
GGCTTTTTGCAGAAGGATTAA


Translation (450 aa):
MGETMSKRLKFHLGEAEMEERSFPNPFPDYEAAASAAGLAAGSAEETGRVCPLPTTEDPGLPFHPNGKIV
P
NFIKRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWT
GIALLYLQLYRVTGDQTYLLRSLDYVKRTLRNL
S
GRRVTFLCGDAGPLAVGAVIYHKLKSECESQECIT
KLLQMHRTIVCQESELPDELLYGRAGYLYALLYL
N
TEIGPGTVGETAIKE
VVSAIIESGKSLSREERKSERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPEAKV
D
QETLTEMVKPSIDYVRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLLQAYQ
VFKEEKYLKEAMEC
S
DVIWQRGLLRKGYGICHGTSGNGYSFLSLYRLTQDKKYLYRACK
FAEWCLDYGAHGCRIPDRPYSLFEG
M
AGAVHFLSDILVPETARFPAFELGFLQKD




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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