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Report for CCDS2004.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2004.2 Public Homo sapiens 2 RPIA 24 110 108 CCDS HistoryNCBI Gene:22934Re-query CCDS DB by CCDS ID:2004.2Re-query CCDS DB by GeneID:22934See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 2004.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000283646.5 ENSP00000283646.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000283646.5Link to Ensembl Protein Viewer:ENSP00000283646.3Re-query CCDS DB by Nucleotide ID:ENST00000283646Re-query CCDS DB by Protein ID:ENSP00000283646
Original member Current member NCBI NM_144563.3 NP_653164.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144563.3Link to Protein Sequence:NP_653164.2Re-query CCDS DB by Nucleotide ID:NM_144563Re-query CCDS DB by Protein ID:NP_653164Link to BLAST:NP_653164.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653164.2 311 P49247 311 100% 0 0

Chromosomal Locations for CCDS 2004.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88691699 88691983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88698484 88698544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88700009 88700064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88729278 88729337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88734552 88734616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88735669 88735737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88736535 88736676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88737977 88738076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88749981 88750078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGCAGCGCCCCGGGCCCTTCAGCACCCTCTACGGGCGGGTCTTGGCCCCGCTGCCCGGGAGGGCCGGGG
GCGCGGCCTCCGGCGGAGGAGGGAACAGCTGGGACCTCCCGGGTTCCCACGTGCGGCTGCCGGGGCGTGC
ACAGTCTGGGACCCGTGGCGGTGCTGGCAACACAAGCACCAGCTGCGGGGACTCCAACAGCATCTGCCCG
GCCCCCTCCACGATGTCCAAGGCCGAGGAGGCCAAGAAGCTGGCGGGCCGCGCGGCTGTGGAGAACCACG
TGAGGAATAACCAAGTGCTGGGAATTGGAAGTGGTTCTACAATTGTCCATGCTGTGCAGCGAATAGCTGA
AAGGGTGAAGCAAGAGAATCTGAACCTCGTCTGTATTCCCACTTCCTTCCAGGCCCGCCAGCTCATCCTG
CAGTATGGCTTGACCCTCAGTGATCTGGATCGACACCCAGAGATCGACCTTGCCATCGATGGTGCTGATG
AAGTAGATGCTGATCTCAATCTCATCAAGGGTGGCGGAGGCTGCCTGACCCAGGAGAAGATTGTGGCTGG
CTATGCTAGTCGCTTCATCGTGATCGCTGATTTCAGGAAAGATTCGAAGAATCTCGGGGATCAGTGGCAC
AAGGGAATCCCCATCGAGGTCATCCCAATGGCCTATGTCCCAGTGAGCCGAGCTGTGAGCCAGAAGTTTG
GGGGCGTGGTTGAACTTCGAATGGCTGTCAACAAGGCTGGTCCTGTGGTGACAGATAATGGGAATTTTAT
CTTGGACTGGAAGTTTGACCGGGTACACAAATGGAGTGAAGTGAATACAGCTATCAAAATGATCCCAGGT
GTGGTGGACACAGGCCTATTCATCAACATGGCTGAGAGAGTCTACTTTGGGATGCAGGATGGCTCAGTGA
ACATGAGGGAGAAGCCTTTCTGTTGA

Translation (311 aa):
MQRPGPFSTLYGRVLAPLPGRAGGAASGGGGNSWDLPGSHVRLPGRAQSGTRGGAGNTSTSCGDSNSICP
APSTMSKAEEAKKLAGRAAVENHVRNNQVLGIGSGSTIVHAVQRIAERVKQENLNLVCIPTSFQARQLIL
QYGLTLSDLDRHPEIDLAIDGADEVDADLNLIKGGGGCLTQEKIVAGYASRFIVIADFRKDSKNLGDQWH
KGIPIEVIPMAYVPVSRAVSQKFGGVVELRMAVNKAGPVVTDNGNFILDWKFDRVHKWSEVNTAIKMIPG
VVDTGLFINMAERVYFGMQDGSVNMREKPFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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