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Report for CCDS19982.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19982.1 Public Mus musculus 6 Mkln1 23 108 98 CCDS HistoryNCBI Gene:27418Re-query CCDS DB by CCDS ID:19982.1Re-query CCDS DB by GeneID:27418See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19982.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026699.14 ENSMUSP00000026699.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026699.14Link to Ensembl Protein Viewer:ENSMUSP00000026699.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000026699Re-query CCDS DB by Protein ID:ENSMUSP00000026699
Original member NCBI NM_013791.2 NP_038819.1 Updated not alive Link to Nucleotide Sequence:NM_013791.2Link to Protein Sequence:NP_038819.1Re-query CCDS DB by Nucleotide ID:NM_013791Re-query CCDS DB by Protein ID:NP_038819
Current member NCBI NM_013791.3 NP_038819.1 Accepted alive Link to Nucleotide Sequence:NM_013791.3Link to Protein Sequence:NP_038819.1Re-query CCDS DB by Nucleotide ID:NM_013791Re-query CCDS DB by Protein ID:NP_038819Link to BLAST:NP_038819.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038819.1 735 O89050 735 100% 0 0

Chromosomal Locations for CCDS 19982.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31398857 31398954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31418931 31419000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31426714 31426856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31428137 31428225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31431140 31431249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31432939 31433131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31449496 31449573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31451519 31451584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31458955 31459067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31468131 31468343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31474299 31474520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31477927 31478056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31489335 31489482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31490442 31490556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31492645 31492784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31496669 31496771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31499887 31499941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31507625 31507746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2208 nt):
ATGGCGGCTGGCGGGGCTGTTGCTGTGGCGCCGGAGTGCCGGCTTCTGCCCTACGCGCTGCATAAGTGGA
GCTCCTTCTCCTCCACCTACCTTCCCGAGAACATTTTAGTGGATAAACCAAATGATCAGTCTTCCAGATG
GTCTTCAGAGAGCAACTATCCTCCCCAATACTTGATTCTGAAGCTTGAAAGGCCTGCTATCGTTCAGAAT
ATTACATTTGGAAAATATGAGAAAACTCATGTCTGCAATTTGAAGAAATTCAAAGTTTTTGGTGGAATGA
ATGAAGAAAATATGACAGAGCTGTTGTCCAGTGGCCTGAAGAATGATTATAACAAAGAGACATTTACCTT
GAAACATAAAATTGATGAACAGATGTTCCCTTGTCGATTCATTAAAATTGTTCCACTTTTGTCCTGGGGG
CCCAGCTTTAACTTTAGCATCTGGTATGTTGAACTTAGTGGCATTGATGATCCTGATATCGTGCAGCCCT
GTCTGAACTGGTACAGCAAGTACCGTGAACAGGAAGCCATTCGCCTTTGCCTAAAACACTTCAGACAACA
TAACTATACAGAGGCTTTTGAATCCCTGCAGAAGAAAACCAAGATTGCACTGGAACATCCAATGTTGACA
GATATGCATGACAAATTGGTGTTAAAGGGTGACTTTGATGCTTGCGAGGAGTTGATTGAAAAAGCTGTAA
ATGATGGCTTGTTCAATCAGTATATCAGTCAACAGGAGTATAAGCCACGGTGGAGTCAGATTATTCCTAA
GAGCACCAAAGGCGATGGAGAAGATAACAGACCAGGAATGAGAGGGGGCCATCAAATGGTCATTGACGTC
CAGACAGAGACTGTTTATTTGTTTGGTGGCTGGGATGGAACACAAGATCTTGCTGACTTCTGGGCATACA
GTGTGAAGGAGAACCAGTGGACATGTATTTCTAGAGACACTGAGAAAGAGAATGGTCCGAGTGCCAGATC
GTGTCATAAGATGTGCATTGACATTCAGCGGAGACAAATCTACACATTGGGCCGTTACTTGGATTCCTCT
GTGAGGAACAGCAAATCTCTGAAAAGTGATTTCTACCGTTACGACATTGACACTAATACCTGGATGTTAC
TAAGTGAAGATACTGCTGCCGACGGTGGACCAAAGTTGGTGTTTGATCATCAGATGTGTATGGACTCAGA
AAAACATATGATCTACACGTTTGGTGGCAGGATTTTGACGTGTAATGGCAGTGTAGATGACAGCAGAGCC
AGTGAGCCACAATTCAGTGGGTTGTTTGCGTTCAACTGCCAGTGTCAAACTTGGAAACTTCTTCGAGAGG
ATTCCTGTAATGCTGGCCCTGAGGACATCCAGTCTCGGATTGGACACTGCATGCTGTTCCACTCAAAAAA
CCGTTGCTTATATGTGTTTGGTGGCCAGAGATCCAAGACCTATTTGAATGATTTCTTTAGTTATGATGTG
GACTCAGATCATGTAGACATAATTTCAGATGGCACCAAGAAAGACTCTGGAATGGTTCCAATGACCGGAT
TCACACAGAGAGCAACTATTGATCCAGAACTGAATGAAATACATGTCTTATCCGGACTTAGCAAAGACAA
AGAAAAGAGGGAAGAGAATGTCAGAAATTCATTCTGGATTTATGACATTGTGAGGAATAGCTGGTCTTGT
GTCTATAAGAATGATCAAGCTACAAAAGATAATCTGAGTAAAAGTCTTCAGGAGGAAGAACCATGTCCAA
GGTTTGCCCATCAACTCGTTTATGATGAATTACACAAGGTTCATTATTTATTTGGTGGAAATCCAGGAAA
ATCTTGCTCTCCAAAGATGAGACTAGATGACTTCTGGTCACTGAAGTTGTGTAGACCTTCAAAAGACTAC
TTACTGAGGCATTGCAAGTACCTCATAAGAAAACACAGGTTTGAAGAAAAGGCCCAAATGGATCCCCTTA
GTGCTCTGAAGTATTTACAAAATGATCTTTATATAACTGTGGATCATTCGGACCCAGAAGAGACAAAAGA
GTTTCAACTCCTAGCCTCAGCTCTGTTCAAATCTGGCTCAGATTTCACAGCTCTAGGCTTTTCAGATGTG
GATCATACCTATGCTCAAAGAACTCAGCTCTTTGACACCTTAGTAAATTTCTTTCCTGACAGCATGACTC
CTCCTAAAGGCAACCTGGTAGACCTGATCACACTGTAG

Translation (735 aa):
MAAGGAVAVAPECRLLPYALHKWSSFSSTYLPENILVDKPNDQSSRWSSESNYPPQYLILKLERPAIVQN
ITFGKYEKTHVCNLKKFKVFGGMNEENMTELLSSGLKNDYNKETFTLKHKIDEQMFPCRFIKIVPLLSWG
PSFNFSIWYVELSGIDDPDIVQPCLNWYSKYREQEAIRLCLKHFRQHNYTEAFESLQKKTKIALEHPMLT
DMHDKLVLKGDFDACEELIEKAVNDGLFNQYISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDV
QTETVYLFGGWDGTQDLADFWAYSVKENQWTCISRDTEKENGPSARSCHKMCIDIQRRQIYTLGRYLDSS
VRNSKSLKSDFYRYDIDTNTWMLLSEDTAADGGPKLVFDHQMCMDSEKHMIYTFGGRILTCNGSVDDSRA
SEPQFSGLFAFNCQCQTWKLLREDSCNAGPEDIQSRIGHCMLFHSKNRCLYVFGGQRSKTYLNDFFSYDV
DSDHVDIISDGTKKDSGMVPMTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSC
VYKNDQATKDNLSKSLQEEEPCPRFAHQLVYDELHKVHYLFGGNPGKSCSPKMRLDDFWSLKLCRPSKDY
LLRHCKYLIRKHRFEEKAQMDPLSALKYLQNDLYITVDHSDPEETKEFQLLASALFKSGSDFTALGFSDV
DHTYAQRTQLFDTLVNFFPDSMTPPKGNLVDLITL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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