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Report for CCDS19826.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19826.1 Public Mus musculus 5 Foxk1 23 108 98 CCDS HistoryNCBI Gene:17425Re-query CCDS DB by CCDS ID:19826.1Re-query CCDS DB by GeneID:17425See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19826.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072837.6 ENSMUSP00000072616.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072837.6Link to Ensembl Protein Viewer:ENSMUSP00000072616.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072837Re-query CCDS DB by Protein ID:ENSMUSP00000072616
Original member Current member NCBI NM_199068.2 NP_951031.2 Accepted alive Link to Nucleotide Sequence:NM_199068.2Link to Protein Sequence:NP_951031.2Re-query CCDS DB by Nucleotide ID:NM_199068Re-query CCDS DB by Protein ID:NP_951031Link to BLAST:NP_951031.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_951031.2 719 P42128 719 100% 0 0

Chromosomal Locations for CCDS 19826.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 142401524 142402041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142435141 142435326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142448687 142448843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142450241 142450387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142451439 142451632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142453509 142453675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142453760 142454044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142455353 142455577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142456476 142456756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2160 nt):
ATGGCCGAAGTCGGCGAGGACAGCGGCGCCCGCGCCCTGCTGGCGCTGCGCTCGGCTCCCTGCAGCCCCG
TGCTATGCGCCGCGGCTGCGGCCGCCGCCTTCCCGGCCACTACGTCCCCGCCGCCGCCGGCGCAACCTCC
ACCCGGGCCGCCCGCGCTGCCCGCCGAGCCCGGCCCCGGGCCGGTGCCCTCCACCGTCGCCACTGCCACC
ACCACCGCGCCCGCCCTGGTGGCCGCGGCCGCTGCCTCCGTGCGCCAGAGCCCCGGGCCTGCCCTGGCTC
GCCTGGAGGGTCGGGAGTTCGAGTTCCTGATGCGACAGCCCAGCGTCACCATCGGCCGCAACTCGTCGCA
GGGCTCGGTGGACCTAAGCATGGGCCTGTCGAGCTTCATTTCCCGGCGCCACCTGCAGCTCAGCTTCCAG
GAGCCTCACTTCTATCTTCGCTGTCTCGGCAAGAACGGCGTCTTCGTGGACGGGGCCTTCCAGAGGCGCG
GAGCGCCCGCCCTGCAGCTACCCCAACAATGCACCTTCCGGTTCCCGAGCACGGCCATCAAGATCCAGTT
CACATCGCTATACCATAAAGAGGAGGCCCCAGCATCGCCCCTGCGGCCACTCTACCCACAGATCTCCCCA
CTGAAGATCCACATTCCGGAGCCGGATCTCCGGAGCCTCGTCAGCCCCATCCCTTCCCCAACCGGCACCA
TCAGTGTCCCCAACTCCTGTCCAGCAAGTCCTCGAGGGGCTGGGTCATCCAGTTATCGCTTTGTCCAGAA
TGTGACCTCCGACCTTCAGCTGGCCGCAGAGTTTGCTGCGAAGGCCGCCTCCGAGCAGCAAGCAGATGCG
TCTGGCGGAGACAGCCCCAAGGACGAGTCGAAGCCACCGTACTCCTATGCGCAGCTGATCGTGCAGGCCA
TCTCCTCAGCCCAGGACAGGCAGCTAACACTAAGTGGCATCTACGCCCACATCACCAAACATTACCCTTA
CTACAGGACTGCCGACAAGGGCTGGCAGAACTCTATCCGACACAACCTCTCTCTTAACCGCTACTTCATC
AAAGTCCCTCGGTCCCAGGAGGAGCCTGGGAAGGGCTCTTTTTGGCGAATAGACCCTGCCTCCGAAGCCA
AGCTCGTGGAACAAGCATTCCGAAAGCGGAGACAGAGAGGTGTCTCCTGCTTCCGCACCCCCTTCGGGCC
TCTGTCCTCACGGAGTGCTCCAGCTTCACCCACCCACCCAGGGCTGATGTCCCCTCGTTCCAGTGGCCTG
CAGACCCCAGAGTGCCTGTCTCGGGAGGGCTCCCCCATTCCACATGATCCCGACTTGGGGTCAAAGTTAG
CCTCTGTTCCAGAGTACCGCTATTCCCAGAGTGCCCCAGGCTCCCCTGTCAGCGCCCAGCCGGTGATCAT
GGCTGTCCCTCCCCGACCTTCCAACCTAGTGGCTAAGCCTGTCGCCTACATGCCAGCTTCCATAGTGACC
TCACAGCAGCCCTCAGGCCACGCCATCCATGTGGTCCAGCAGGCCCCTACCGTCACCATGGTGAGGGTGG
TTACCACCTCTGCCAACTCAGCCAACGGGTACATCCTGGCTAGCCAGGGCTCGACTGGGACCTCCCACGA
CACAGCAGGCACAGCCGTGTTGGACCTGGGCAATGAGGCTCGAGGTTTGGAAGAGAAGCCCACCATAGCA
TTTGCCACAATCCCCGCAGCCAGCCGAGTTATCCAGACGGTCGCCAGCCAGATGGCCCCAGGAGTCCCCG
GACACACAGTCACCATCCTACAGCCGGCTACACCAGTGACTATCGGGCAGCACCACCTTCCGGTCCGGGC
TGTCACTCAGAATGGAAAGCACGCTGTACCCACGAATAGCTTGACTGGCAATGCTTATGCCCTCAGCAGC
CCCCTGCAGCTCCTGGCAGCCCAGGCAAGTTCATCCACTCCAGTGGTCATCACCCGGGTGTGTGAGGTGG
GGCCTGAGGAGCCAGCAGCAGCCGTCTCAGTAGCCGCTAATGCAGCGCCAACCCCAGCCGCCTCCACTAC
CACATCTGCCTCTTCTAGCGGAGAGCCCGAGGTCAAGAGGTCCCGGGTAGAGGAACCCGGTGGGACAGCC
ACCACACAGCCCACAGCTATGGCAGCCACCGGCCCTCAGGGCCCGGGGACCGGCGAGTGA

Translation (719 aa):
MAEVGEDSGARALLALRSAPCSPVLCAAAAAAAFPATTSPPPPAQPPPGPPALPAEPGPGPVPSTVATAT
TTAPALVAAAAASVRQSPGPALARLEGREFEFLMRQPSVTIGRNSSQGSVDLSMGLSSFISRRHLQLSFQ
EPHFYLRCLGKNGVFVDGAFQRRGAPALQLPQQCTFRFPSTAIKIQFTSLYHKEEAPASPLRPLYPQISP
LKIHIPEPDLRSLVSPIPSPTGTISVPNSCPASPRGAGSSSYRFVQNVTSDLQLAAEFAAKAASEQQADA
SGGDSPKDESKPPYSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLNRYFI
KVPRSQEEPGKGSFWRIDPASEAKLVEQAFRKRRQRGVSCFRTPFGPLSSRSAPASPTHPGLMSPRSSGL
QTPECLSREGSPIPHDPDLGSKLASVPEYRYSQSAPGSPVSAQPVIMAVPPRPSNLVAKPVAYMPASIVT
SQQPSGHAIHVVQQAPTVTMVRVVTTSANSANGYILASQGSTGTSHDTAGTAVLDLGNEARGLEEKPTIA
FATIPAASRVIQTVASQMAPGVPGHTVTILQPATPVTIGQHHLPVRAVTQNGKHAVPTNSLTGNAYALSS
PLQLLAAQASSSTPVVITRVCEVGPEEPAAAVSVAANAAPTPAASTTTSASSSGEPEVKRSRVEEPGGTA
TTQPTAMAATGPQGPGTGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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