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Report for CCDS19652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19652.1 Public Mus musculus 5 P2rx7 16 104 75 CCDS HistoryNCBI Gene:18439Re-query CCDS DB by CCDS ID:19652.1Re-query CCDS DB by GeneID:18439

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Sequence IDs included in CCDS 19652.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000100737 ENSMUSP00000098303 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100737Link to Ensembl Protein Viewer:ENSMUSP00000098303Re-query CCDS DB by Nucleotide ID:ENSMUST00000100737Re-query CCDS DB by Protein ID:ENSMUSP00000098303
Original member Current member EBI,WTSI OTTMUST00000066137 OTTMUSP00000033090 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000066137Link to Vega Protein Viewer:OTTMUSP00000033090Re-query CCDS DB by Nucleotide ID:OTTMUST00000066137Re-query CCDS DB by Protein ID:OTTMUSP00000033090
Original member Current member NCBI NM_011027.3 NP_035157.2 Accepted alive Link to Nucleotide Sequence:NM_011027.3Link to Protein Sequence:NP_035157.2Re-query CCDS DB by Nucleotide ID:NM_011027Re-query CCDS DB by Protein ID:NP_035157Link to BLink:NP_035157.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035157.2 595 Q9Z1M0 595 100% 0 0

Chromosomal Locations for CCDS 19652.1

Assembly GRCm38.p2 (GCF_000001635.22)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 5Link to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5

Chromosome Start Stop Links
5 122644074 122644198 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 122652727 122652895 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 122654161 122654229 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 122657012 122657084 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 122658708 122658804 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 122663577 122663657 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 122664545 122664674 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 122666144 122666280 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 122670438 122670528 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 122673355 122673420 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 122673666 122673815 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 122676662 122676763 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 122680807 122681304 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternate exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1788 nt):
ATGCCGGCTTGCTGCAGCTGGAACGATGTCTTGCAGTATGAGACAAACAAAGTCACCCGGATCCAGAGCA
CG
AATTATGGCACCGTCAAGTGGGTCTTGCACATGATCGTCTTTTCCTACATTAGCTTTGCTTTGGTGAG
C
GATAAGCTGTACCAGCGGAAAGAGCCTGTTATCAGCTCCGTGCACACCAAGGTCAAAGGCATAGCAGAG
GTG
ACGGAGAATGTCACAGAGGGTGGGGTGACGAAGTTAGGACACAGCATCTTTGACACTGCAGACTACA
CC
TTCCCTTTGCAGGGGAACTCATTCTTTGTCATGACAAACTATGTCAAGTCAGAAGGCCAAGTGCAGAC
G
CTGTGTCCTGAGTATCCCAGGCGCGGTGCACAGTGCTCTTCTGACCGGCGTTGTAAAAAGGGGTGGATG
GAC
CCACAGAGCAAAGGAATCCAGACTGGCAGGTGTGTTCCATATGACAAGACAAGGAAGACCTGTGAAG
TC
TCTGCCTGGTGTCCTACTGAGGAGGAGAAAGAAGCTCCCCGACCTGCACTCTTGAGGAGCGCCGAAAA
C
TTCACCGTACTCATCAAGAATAATATCCACTTCCCCGGCCACAACTATACCACGAGAAACATCTTGCCA
ACT
ATGAACGGCTCTTGTACCTTTCACAAGACTTGGGACCCTCAGTGTTCCATCTTCCGACTAGGGGACA
TC
TTCCAGGAAGCAGGAGAGAACTTTACAGAGGTGGCAGTTCAGGGAGGAATCATGGGTATCGAGATCTA
C
TGGGATTGCAACCTAGACAGCTGGTCCCATCACTGCCGACCCAGGTACAGCTTCCGCCGCCTGGATGAC
AAG
AACACGGATGAGTCCTTCGTCCCCGGCTACAACTTCAGATATGCCAAGTACTATAAGGAGAACAATG
TG
GAAAAGCGGACGTTGATCAAAGCCTTCGGCATCCGTTTTGACATCCTGGTTTTCGGCACTGGAGGAAA
A
TTTGACATCATCCAGCTGGTTGTATACATTGGATCCACCCTGTCCTACTTTGGCTTGGCCACTGTGTGC
ATT
GACTTGCTCATCAACACATACTCCAGTGCTTTCTGCAGGTCGGGGGTTTACCCCTACTGTAAGTGCT
GT
GAGCCCTGCACAGTGAACGAGTATTACTACAGAAAGAAGTGTGAGTCCATCATGGAACCCAAGCCGAC
G
TTGAAGTATGTGTCCTTTGTCGACGAGCCGCACATTCGCATGGTGGACCAGCAGCTGCTTGGGAAAAGT
CTG
CAAGTTGTCAAAGGCCAAGAAGTTCCAAGACCCCAGATGGACTTCTCCGACCTGTCTAGGCTGTCCC
TA
TCTCTCCACGACTCACCCCTGACTCCTGGACAATCTGAGGAAATTCAGCTGCTCCATGAAGAGGTGGC
C
CCTAAGTCCGGGGACAGCCCGAGTTGGTGCCAGTGTGGAAATTGCCTCCCGTCTCGCCTACCGGAGCAA
CGC
AGGGCCCTGGAGGAGCTGTGCTGCCGGAGGAAGCCGGGGCGGTGCATCACCACCTCCAAGCTCTTCC
AT
AAGCTCGTGCTGTCCCGAGACACCCTGCAGCTCCTCCTGCTTTACCAGGATCCCTTGCTGGTGCTGGG
G
GAAGAGGCCACCAACAGCAGGCTGCGACACCGTGCTTACAGGTGCTATGCCACCTGGCGCTTCGGCTCC
CAG
GACATGGCCGACTTTGCCATTCTGCCCAGCTGTTGCCGCTGGAGGATCCGGAAGGAGTTCCCCAAGA
CC
GAGGGGCAGTATAGTGGCTTCAAGTATCCCTACTGA


Translation (595 aa):
MPACCSWNDVLQYETNKVTRIQSTNYGTVKWVLHMIVFSYISFALVSDKLYQRKEPVISSVHTKVKGIAE
V
TENVTEGGVTKLGHSIFDTADYTFPLQ
GNSFFVMTNYVKSEGQVQTLCPEYPRRGAQCSSDRRCKKGWM
D
PQSK
GIQTGRCVPYDKTRKTCEVSAWCPTEEEKEAPRPALLRSAENFTVLIKNNIHFPGHNYTTRNILP
T
MNGSCTFHKTWDPQCSIFRLGDIFQEAGENFTEVAVQ
GGIMGIEIYWDCNLDSWSHHCRPRYSFRRLDD
K
NTDESFVPGYNF
RYAKYYKENNVEKRTLIKAFGIRFDILVFGTGGKFDIIQLVVYIGSTLSYFGLATVC
I
DLLINTYSSAFCRSGVYPYCKCCEPCTVNEYYYRKKCESIMEPKP
TLKYVSFVDEPHIRMVDQQLLGKS
L
QVVKGQEVP
RPQMDFSDLSRLSLSLHDSPLTPGQSEEIQLLHEEVAPKSGDSPSWCQCGNCLPSRLPEQ
R
RALEELCCRRKPGRCITTSKLFHKLVLSRDTLQLLLLYQDPLLVLGEEATNSRLRHRAYRCYATWRFGS
Q
DMADFAILPSCCRWRIRKEFPKTEGQYSGFKYPY




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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