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Report for CCDS18846.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18846.1 Public Mus musculus 4 Emc1 23 108 98 CCDS HistoryNCBI Gene:230866Re-query CCDS DB by CCDS ID:18846.1Re-query CCDS DB by GeneID:230866See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18846.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042096.14 ENSMUSP00000049034.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042096.14Link to Ensembl Protein Viewer:ENSMUSP00000049034.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000042096Re-query CCDS DB by Protein ID:ENSMUSP00000049034
Original member Current member NCBI NM_001039200.2 NP_001034289.1 Accepted alive Link to Nucleotide Sequence:NM_001039200.2Link to Protein Sequence:NP_001034289.1Re-query CCDS DB by Nucleotide ID:NM_001039200Re-query CCDS DB by Protein ID:NP_001034289Link to BLAST:NP_001034289.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034289.1 994 Q8C7X2-2 994 100% 0 0

Chromosomal Locations for CCDS 18846.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 139352620 139352717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139354161 139354285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139354812 139354877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139355092 139355185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139357503 139357631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139359240 139359366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139360030 139360179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139360457 139360624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139360880 139360951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139361262 139361324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139362096 139362218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139363166 139363262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139363657 139363779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139365195 139365394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139365518 139365667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139366375 139366536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139367094 139367213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139369875 139370012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139370924 139371097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139371596 139371806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139373809 139373893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139375080 139375209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139375346 139375525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2985 nt):
ATGGCGGTCGCGGTGGCGTCTGGGTTCTGGATCTGGGCTGCTGTGCTGCTCGTCCCTGCGGCCGCGGTCT
AC
GAAGACCAAGTGGGCAAGTTTGACTGGAGACAGCAGTATGTTGGGAAGATCAAGTTTGCCTCCTTGGA
G
TTTTCCCCTGGATCCAAGAAGTTGGTTGTGGCCACAGAGAAGAATGTGATTGCGGCGTTAAATTCTCGG
ACT
GGAGAGATCTTGTGGCGCCATGTTGACAAAGGCACAGCAGAAGGAGCTGTGGATGCCATGCTGGTCC
AT
GGACAAGATGCAATCACTGTATCCAACGGAGGGCGCCTCATGCGTTCCTGGGAGACCAACATCGGGGG
C
CTGAACTGGGAGATAACTCTGGACACTGGCAGTTTCCAGGCACTTGGGCTAGTGGGCCTTCAGGAGTCA
GTG
AGGTACATTGCAGTTCTGAAGAAGACGACCCTCACCCTCCACCACCTCTCCAGTGGGCACCTGAAGT
GG
GTGGAGCATCTGCCAGAAAGTGACAGCATCCTCTACCAGATGGTGTATTCCTACGGCTCCGGGGTGGT
G
TGGGCCCTTGGCATCGTTCCCTTCAGCCACGTGAACATCGTCAAGTTTAACGTGGAGGATGGAGAGATT
GTT
CAGCAGGTCAGGGTTTGGACTCCATGGCTGCAGCACCTCACTGGGGCCTGTGGTGTGGTAGATGAGG
CT
GTCCTGGTATGCCCCGACCCCAGCTCACACTCACTCCACACTTTGGCCCTGGAGACGGAGTGGGAACT
G
CGACAGATCCCCCTGCAGTCTCCTGACTTAGAATTTGGAAGTGGATTCCAGCCCCAAGTGCTGCCCACA
CAA
CCCAGCCCAGTGGCTCCTTCTCGAGCCCAGTTCTTCCTGCAGTTGTCCCCAAGCCACTACGCTCTAC
TG
CACTACCACCATGGTGCCGTGACTCTGCTTAAGAACTTCCCCCAGGCCACGCTCGTCAGCTTCGCCAC
C
ACAGGGGAGAAGACAGTGGCTGCAGTCATGACCTGTCGCACTGAAGTGCAAAAACCTGTCAGTGCTGGA
GAT
GGGTCTGTGGCAAGCTTTCCTGAGACATCTGGTGCACAGGACTCTCTGGCTTGCTTCAACCAGACCT
AC
ACCATTAACCTGTACTTAGTGGAGACAGGTCGGCGGCTCCTAGACACTTCCATTTCCTTCAGCCTGGA
G
CAGAAGGGCACGCGACCTGAGCAGCTGTACATCCAGGTGTTCTTGAAGAAGGACGACTCGGTGGGCTAC
CGG
GCCTTGGTGCAGACACAGGACCATCTGCAGCTGTTCCTGCAGCAGCTTGCTGGGAAGGTGGTGTTGT
GG
AGCCGAGAGGAGTCCCTGGCAGAAGTCGTGTGCCTGGAGATGGTGGATCTCCCCCTGACTGGAGCGCA
G
GCTGAGTTGGAAGGAGAATTTGGCAAGAAGGCAGATGGCTTGCTGGGGATGTTCCTGAAACGCCTGTCG
TCC
CAGCTCATCCTGCTCCAGGCCTGGACTTCCCACCTCTGGAAAATGTTCTACGATGCTCGGAAGCCCC
GA
AGCCAGATTAAGAATGAGATCAACATCGACACACTGGCTAGAGATGAGTTCAACCTGCAGAAAATGAT
G
GTGACGGTAACAGCCTCAGGCAAGCTCTTTGGCATCGAGAGCAGCTCTGGAACCATTCTGTGGAAGCAG
TAT
CTGCCCAATGTTAAGCCAGACTCCTCCTTTAAGCTGATGGTGCAGAGGACTACTGCCCATTTCCCCC
AT
CCACCCCAGTGCACGCTGCTGGTGAAGGACAAGGAGACAGGAATGAGCTCTCTGTTTGTCTTCAACCC
C
ATTTTTGGCAAGTGGAGCCAGGTAGCTCCCCCAGTGCTGAAGCGCCCCATCTTGCAGTCACTGCTTCTC
CCA
GTCATGGATCAAGACTATGCCAAGGTGTTGCTGTTGGTGGATGACGAATACAAGGTCACAGCTTTCC
CA
GCTACGCGGAATGTCTTGCGGCAGCTGCATGAACTTGCCCCCTCCATCTTCTTCTACTTGGTGGATGC
A
GAGCAGGGGCGGCTCAGTGGGTATCAGCTTCGAAAGGATCTCACTACAGAACTGAGTTGGGAGCTGACC
ATC
CCCCCAGAAGTGCAGCGCGTCGTCAAGGTCAAGGGGAAGCGCAGCAGCGAGCACGTACACTCCCAGG
GC
CGGGTGATGGGGGATCGAAGTGTGCTCTACAAGAGTCTGAACCCCAACTTGCTGGCCGTGGTGACAGA
G
AGCACGGATGTCCACCACGAGCGCACCTTTATTGGCATCTTCCTCATTGATGGTGTCACTGGCCGCATC
ATC
CACTCCTCCGTGCAGAAGAAGGCCAGGGGCCCTGTCCACCTTGTGCATTCAGAGAACTGGGTGGTGT
AC
CAGTACTGGAATTCTAAGGCTCGGCGCAATGAGCTGACGGCCCTGGAGCTCTACGAGGGCACTGAACA
G
TACAATGCCACTGCCTTCAGCTCTCTAGACCGACCCCAGCTGCCCCAGGTCCTCCAGCAGTCCTACATC
TTC
CCCTCCTCCATCAGTGCCATGGAAGCTACCATCACCGAGAGGGGCATCACCAGCCGGCACTTGCTCA
TT
GGGCTGCCTTCTGGAGCAATCCTTTCCCTCCCCAAGGCCTTGCTGGATCCCCGGCGCCCAGAGATCCC
A
ACAGAGCAAAGCAGAGAAGAGAACCTGATCCCATATTCTCCAGATGTTCAGGTCCATGCAGAGCGATTC
ATC
AACTATAACCAGACAGTCTCTCGAATGCGAGGCATCTATACAGCGCCCTCAGGCCTGGAGTCCACTT
GT
TTGGTTGTGGCCTACGGTTTGGATATTTACCAAACTCGAGTTTACCCGTCCAAGCAGTTTGATGTCCT
G
AAAGATGACTACGACTATGTGCTCATCAGCAGTGTCCTTTTTGGCCTGGTTTTTGCCACCATGATCACA
AAG
AGGCTGGCACAGGTGAAACTCCTCAATCGAGCCTGGCGGTAA


Translation (994 aa):
MAVAVASGFWIWAAVLLVPAAAVYEDQVGKFDWRQQYVGKIKFASLEFSPGSKKLVVATEKNVIAALNSR
T
GEI
LWRHVDKGTAEGAVDAMLVHGQDAITVSNGGRLMRSWETNIGGLNWEITLDTGSFQALGLVGLQES
V
RYIAVLKKTTLTLHHLSSGHLKWVEHLPE
SDSILYQMVYSYGSGVVWALGIVPFSHVNIVKFNVEDGEI
V
QQ
VRVWTPWLQHLTGACGVVDEAVLVCPDPSSHSLHTLALETEWELRQIPLQSPDLEFGSGFQPQVLPT
Q
PSPVAPSRAQFFLQLSPSHYALLHYHHGAVTLLKNFPQ
ATLVSFATTGEKTVAAVMTCRTEVQKPVSAG
D
GSVASFPETSGAQ
DSLACFNQTYTINLYLVETGRRLLDTSISFSLEQKGTRPEQLYIQVFLKKDDSVGY
R
ALVQTQDHLQLFLQQL
AGKVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKADGLLGMFLKRLS
S
QLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVTVTASGK
LFGIESSSGTILWKQ
Y
LPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDK
ETGMSSLFVFNPIFGKWSQVAPPVLKRPILQSLLL
P
VMDQDYAKVLLLVDDEYK
VTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLSGYQLRKDLTTELSWELT
I
PPEVQRVVKVKGKRSSEHVHSQGRVMGDRSVLYK
SLNPNLLAVVTESTDVHHERTFIGIFLIDGVTGRI
I
HSSVQKKARGPVHLVHSENWVV
YQYWNSKARRNELTALELYEGTEQYNATAFSSLDRPQLPQVLQQSYI
F
PSSISAMEATITERGITSRHLL
IGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQVHAERF
I
NYNQTVSRMRGIYTAPSGLESTCL
VVAYGLDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFATMIT
K
RLAQVKLLNRAWR




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser