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Report for CCDS18154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18154.1 Public Mus musculus 4 Coro2a 23 108 98 CCDS HistoryNCBI Gene:107684Re-query CCDS DB by CCDS ID:18154.1Re-query CCDS DB by GeneID:107684See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18154.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030021.13 ENSMUSP00000030021.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030021.13Link to Ensembl Protein Viewer:ENSMUSP00000030021.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030021Re-query CCDS DB by Protein ID:ENSMUSP00000030021
Original member Current member EBI ENSMUST00000107756.3 ENSMUSP00000103385.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107756.3Link to Ensembl Protein Viewer:ENSMUSP00000103385.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107756Re-query CCDS DB by Protein ID:ENSMUSP00000103385
Original member Current member NCBI NM_001164804.1 NP_001158276.1 Accepted alive Link to Nucleotide Sequence:NM_001164804.1Link to Protein Sequence:NP_001158276.1Re-query CCDS DB by Nucleotide ID:NM_001164804Re-query CCDS DB by Protein ID:NP_001158276Link to BLAST:NP_001158276.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158276.1 524 Q8C0P5 524 100% 0 0

Chromosomal Locations for CCDS 18154.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 46539136 46539267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46540418 46540689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46541893 46541983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46542235 46542347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46543348 46543444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46544063 46544167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46545612 46545728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46546649 46546828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46548768 46548917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46551329 46551445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46562895 46563095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGTCATGGCACCCCCAGTACCGCAGCTCCAAGTTCCGTCATGTCTACGGCAAGCCCGCCAGCAAAGAGA
ACTGCTACGACTCTGTGCCCATCACACGCAGCGTCCACGACAACCACTTCTGTGCCGTGAACCCCCACTT
CATCGCTGTGGTCACTGAATGTGCCGGCGGGGGCGCCTTCCTTGTCATCCCCCTGCACCAGACGGGAAAG
TTGGACCCTCACTACCCCAAAGTCTGTGGGCACAGAGGGAACGTCTTGGACATCAAATGGAATCCTTTCA
ATGACTTTGAGATTGCCTCCTGTTCTGAAGATGCCACGATTAAGATCTGGAACATCCCCAAGCAACTGTT
GACAAGGAACCTCACAACCTACAGGAAGGAGCTGATCGGCCATGCTCGCAGGGTGGGGCTGGTGGAGTGG
CACCCCACAACTGCCAACATTCTCTTCAGTGCTGGCTATGACTACAAGGTGATGGTGTGGAACCTGGACA
CAAAGGATTCTGTCATTGCTGGGCCAGTGAAGACAATCAACTGTCACCAAGATGTGATCCTCTCCATGTC
CTTTAACACCAACGGCAGCCTGCTGGCCACCACCTGTAAGGACCGCAAGATTCGGATTGTTGACCCCCGA
CTAGGGATTGTCCTCCAGGAAGCCAGCTACAAGGGGCACCGCGCCAACAAAGTACTGTTCCTGGGGAGCC
TCAAGAAGCTGCTATCCACGGGTACCTCCCGCTGGAACAACCGGCAGATGGCCCTGTGGGACCAGGAAAA
CCTTTCTGTGCCCCTTACAGAGGAAGACCTGGATGGCTCTTCTGGTGTGCTGTTCCCCTTCTTTGACTCG
GACACCAGCATGCTGTACATTGTGGGGAAGGGAGACGGGAACATCCGCTACTATGAGGTAAGCATGGAGA
AACCTCACCTGACCTACCTGACCGAGTACCGCTCCTACAACCCACAGAAGGGGATCGGTATCATGCCAAA
GAGAGGTCTCGATGTGTCTTCCTGCGAGATCTTCCGCTTCTATAAACTGATCACAACCAAAAGCCTCATC
GAGCCAGTGTCCATGATTGTACCCCGAAGGTCAGAATCCTACCAAGAGGACATCTACCCGCCCACCGCAG
CGGCCCAGCCCTCCCTGACGGCTCATGAGTGGCTCAGCGGGATGAACAGAGGGCCTATCATGATGTCCCT
TAGACCCGGCTCCGAGCTGCTGGACTCCCAGACACTGCCTCCAGAGAGACCCCTCTCCAATTCTATGGTC
CAAGTTTCACCTCAGCCCTTAGAACCCATGAAACAGCCGGCCGAAGACGGTGACCAGGCGCCCTTCTCTC
TACTGGAAGAGAAGCTAGCAAAGTGGACCGCAGAGCATCATCTGGGAGAGAAGTCCTGCCTCACTAATGG
CTTTGATGTTTTCGAATGCTCCCCACCAAAGACAGAAAATGAGCTGCTGCAGATGTTCTACCGGCAACAG
GAGGAGATCCGGAGGCTCCGGGAGCTGTTAATCCAGAGAGAAGTCCAGACCAAGCAGCTGGAACTAGAGA
TCAAAAACCTGCGGATGGCCTTAGGACAGCTCTGA

Translation (524 aa):
MSWHPQYRSSKFRHVYGKPASKENCYDSVPITRSVHDNHFCAVNPHFIAVVTECAGGGAFLVIPLHQTGK
LDPHYPKVCGHRGNVLDIKWNPFNDFEIASCSEDATIKIWNIPKQLLTRNLTTYRKELIGHARRVGLVEW
HPTTANILFSAGYDYKVMVWNLDTKDSVIAGPVKTINCHQDVILSMSFNTNGSLLATTCKDRKIRIVDPR
LGIVLQEASYKGHRANKVLFLGSLKKLLSTGTSRWNNRQMALWDQENLSVPLTEEDLDGSSGVLFPFFDS
DTSMLYIVGKGDGNIRYYEVSMEKPHLTYLTEYRSYNPQKGIGIMPKRGLDVSSCEIFRFYKLITTKSLI
EPVSMIVPRRSESYQEDIYPPTAAAQPSLTAHEWLSGMNRGPIMMSLRPGSELLDSQTLPPERPLSNSMV
QVSPQPLEPMKQPAEDGDQAPFSLLEEKLAKWTAEHHLGEKSCLTNGFDVFECSPPKTENELLQMFYRQQ
EEIRRLRELLIQREVQTKQLELEIKNLRMALGQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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