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Report for CCDS18105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18105.1 Public Mus musculus 4 Npr2 23 108 98 CCDS HistoryNCBI Gene:230103Re-query CCDS DB by CCDS ID:18105.1Re-query CCDS DB by GeneID:230103See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18105.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030191.14 ENSMUSP00000030191.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030191.14Link to Ensembl Protein Viewer:ENSMUSP00000030191.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030191Re-query CCDS DB by Protein ID:ENSMUSP00000030191
Original member Current member NCBI NM_173788.4 NP_776149.1 Accepted alive Link to Nucleotide Sequence:NM_173788.4Link to Protein Sequence:NP_776149.1Re-query CCDS DB by Nucleotide ID:NM_173788Re-query CCDS DB by Protein ID:NP_776149Link to BLAST:NP_776149.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776149.1 1047 Q6VVW5-1 1047 100% 0 0

Chromosomal Locations for CCDS 18105.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43632185 43632851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43633525 43633730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43640140 43640253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43640536 43640671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43640919 43641013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43641194 43641326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43641549 43641633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43643054 43643174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43643335 43643409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43643606 43643683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43644083 43644187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43644308 43644379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43646541 43646700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43646916 43647071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43647149 43647317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43647471 43647617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43648077 43648200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43648347 43648415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43650149 43650323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43650394 43650492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43650708 43650799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43650913 43650978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3144 nt):
ATGGCACTGCCATCCCTGCTGCTGGTGGTGGCAGCCCTGGCAGGTGGGGTGCGTCCTCCGGGGGCACGGA
ACCTGACGCTGGCGGTGGTGCTGCCAGAACACAACCTGAGCTATGCCTGGGCCTGGCCACGGGTGGGTCC
TGCTGTGGCACTGGCTGTGGAGGCACTGGGCCGGGCACTGCCCGTGGACCTGCGGTTTGTCAGCTCCGAA
CTAGACGGCGCCTGCTCTGAGTACCTGGCACCACTGCGCGCTGTGGACCTCAAGCTGTACCATGACCCCG
ACCTTCTGTTGGGCCCCGGTTGTGTGTACCCCGCTGCCTCTGTGGCTCGCTTTGCCTCACACTGGCGCCT
TCCCCTCCTGACTGCGGGGGCAGTGGCCTCTGGCTTTGCAGCTAAGAATGAGCATTATCGTACCCTGGTT
CGCACTGGCCCCTCTGCGCCCAAGCTGGGTGAGTTTGTAGTGACATTGCACGGGCACTTCAATTGGACAG
CTCGGGCTGCTTTGCTGTATCTGGATGCTCGCACAGATGACCGGCCCCACTACTTCACCATCGAGGGCGT
CTTTGAGGCCCTGCAGGGCAGCAACCTCAGTGTGCAGCACCAGGTGTATGCCCGAGAGCCAGGTGGCCCT
GAGCAAGCCACCCACTTCATCAGAGCCAACGGGCGCATTGTGTATATCTGCGGCCCCCTGGAAATGCTGC
ATGAGATCCTGCTTCAGGCCCAGAGGGAGAACCTGACCAATGGGGACTATGTCTTCTTTTACCTTGATGT
CTTTGGGGAGAGTCTCCGAGCAGGCCCCACCCGTGCAACAGGCCGGCCATGGCAGGACAATCGAACCCAG
GAACAGGCCCAGGCCCTCAGAGAGGCCTTTCAGACTGTATTGGTGATCACATACCGAGAACCCCCAAATC
CTGAGTATCAGGAGTTTCAGAATCGCCTGCTGATCAGAGCCCGGGAAGACTTTGGTGTGGAGCTGGCCCC
ATCCCTGATGAACCTTATTGCTGGCTGCTTCTATGATGGGATCCTGCTCTATGCCCAAGTCCTGAATGAG
ACTATACAGGAAGGGGGTACCAGGGAAGATGGACTTCGAATTGTGGAGAAGATGCAGGGACGAAGATACC
ATGGTGTAACTGGACTGGTTGTCATGGACAAGAACAATGACCGCGAGACTGATTTCGTCCTGTGGGCCAT
GGGAGACTTGGATTCTGGGGACTTTCAGCCCGCAGCCCATTACTCTGGAGCAGAGAAGCAGATTTGGTGG
ACAGGCCGGCCAATTCCCTGGGTGAAGGGGGCCCCACCTTTGGACAATCCCCCCTGTGCCTTTGACTTGG
ACGACCCATCCTGTGATAAAACTCCACTTTCCACTCTGGCAATCGTGGCCCTGGGCACGGGAGTCACCTT
CATCATGTTTGGTGTTTCCAGTTTCCTAATTTTCCGGAAGCTGATGCTGGAGAAGGAGCTGGCTAGCATG
CTATGGCGCATTCGCTGGGAAGAACTGCAGTTTGGCAACTCGGATCGCTATCACAAGGGTGCAGGCAGTC
GCCTGACGCTGTCGCTGCGGGGATCCAGTTACGGCTCGCTCATGACAGCCCATGGGAAATACCAGATCTT
TGCCAACACCGGTCACTTCAAGGGAAATGTTGTTGCCATCAAACACGTGAATAAGAAGCGCATCGAGCTG
ACCCGGCAAGTTCTGTTTGAACTCAAACACATGAGAGATGTCCAGTTCAACCATCTTACTCGCTTCATCG
GAGCCTGCATAGACCCTCCCAACATCTGCATTGTCACCGAGTATTGTCCTCGTGGGAGCTTACAAGATAT
TCTAGAAAATGACAGCATCAATTTGGACTGGATGTTTCGCTACTCGCTCATCAATGACCTTGTGAAGGGT
ATGGCCTTTCTCCACAACAGCATTATTTCATCTCATGGAAGCCTCAAGTCCTCCAACTGTGTGGTGGATA
GTCGATTTGTGCTCAAAATAACAGATTACGGTCTGGCTAGTTTCCGATCAACTGCTGAACCGGACGACAG
CCATGCCCTCTATGCCAAGAAGCTGTGGACTGCCCCAGAACTGCTTAGCGGGAACCCCTTGCCAACCACA
GGCATGCAGAAAGCAGATGTCTACAGCTTTGCCATCATTCTACAGGAAATAGCACTTCGAAGTGGTCCTT
TCTACTTGGAAGGCCTGGACCTCAGTCCCAAGGAGATTGTCCAGAAGGTGCGGAATGGTCAGAGGCCGTA
TTTCCGGCCAAGCATTGACCGGACACAACTGAATGAAGAGTTAGTTTTGCTGATGGAGAGATGCTGGGCC
CAGGACCCAACAGAACGTCCAGACTTTGGGCAAATCAAGGGCTTCATTCGCCGGTTTAACAAGGAAGGTG
GTACCAGCATATTGGACAACCTCTTGCTGCGCATGGAACAGTATGCTAATAACCTGGAAAAGCTGGTGGA
GGAACGCACACAGGCCTATCTAGAGGAGAAACGCAAAGCGGAGGCCCTGCTGTACCAAATTCTACCCCAT
TCTGTAGCAGAGCAGTTAAAGCGGGGAGAGACGGTTCAGGCGGAGGCCTTCGACAGCGTCACCATCTACT
TCAGTGACATCGTGGGCTTCACAGCGCTGTCAGCTGAGAGCACCCCCATGCAGGTGGTGACACTTCTTAA
TGACCTTTATACCTGCTTTGATGCCATTATCGACAACTTTGATGTCTACAAGGTGGAAACCATTGGGGAT
GCCTACATGGTGGTATCTGGCCTTCCAGGCCGAAACGGTCAGCGCCATGCACCAGAAATTGCTCGAATGG
CCCTAGCATTGCTAGATGCTGTCTCTTCCTTCCGCATCCGCCATCGACCCCATGACCAGCTGAGGTTACG
CATAGGTGTCCATACTGGGCCAGTCTGTGCTGGGGTGGTTGGCCTGAAGATGCCCCGGTACTGTCTTTTT
GGAGACACAGTAAACACTGCTTCTCGAATGGAGTCGAATGGCCAAGCTCTAAAGATCCATGTCTCCTCGA
CCACCAAGGACGCCCTGGATGAGCTGGGATGCTTCCAGCTCGAGCTCCGTGGGGATGTGGAGATGAAGGG
AAAAGGAAAAATGCGAACTTACTGGCTCTTGGGAGAGCAAAAGGGACCTCCCGGACTCCTGTAA

Translation (1047 aa):
MALPSLLLVVAALAGGVRPPGARNLTLAVVLPEHNLSYAWAWPRVGPAVALAVEALGRALPVDLRFVSSE
LDGACSEYLAPLRAVDLKLYHDPDLLLGPGCVYPAASVARFASHWRLPLLTAGAVASGFAAKNEHYRTLV
RTGPSAPKLGEFVVTLHGHFNWTARAALLYLDARTDDRPHYFTIEGVFEALQGSNLSVQHQVYAREPGGP
EQATHFIRANGRIVYICGPLEMLHEILLQAQRENLTNGDYVFFYLDVFGESLRAGPTRATGRPWQDNRTQ
EQAQALREAFQTVLVITYREPPNPEYQEFQNRLLIRAREDFGVELAPSLMNLIAGCFYDGILLYAQVLNE
TIQEGGTREDGLRIVEKMQGRRYHGVTGLVVMDKNNDRETDFVLWAMGDLDSGDFQPAAHYSGAEKQIWW
TGRPIPWVKGAPPLDNPPCAFDLDDPSCDKTPLSTLAIVALGTGVTFIMFGVSSFLIFRKLMLEKELASM
LWRIRWEELQFGNSDRYHKGAGSRLTLSLRGSSYGSLMTAHGKYQIFANTGHFKGNVVAIKHVNKKRIEL
TRQVLFELKHMRDVQFNHLTRFIGACIDPPNICIVTEYCPRGSLQDILENDSINLDWMFRYSLINDLVKG
MAFLHNSIISSHGSLKSSNCVVDSRFVLKITDYGLASFRSTAEPDDSHALYAKKLWTAPELLSGNPLPTT
GMQKADVYSFAIILQEIALRSGPFYLEGLDLSPKEIVQKVRNGQRPYFRPSIDRTQLNEELVLLMERCWA
QDPTERPDFGQIKGFIRRFNKEGGTSILDNLLLRMEQYANNLEKLVEERTQAYLEEKRKAEALLYQILPH
SVAEQLKRGETVQAEAFDSVTIYFSDIVGFTALSAESTPMQVVTLLNDLYTCFDAIIDNFDVYKVETIGD
AYMVVSGLPGRNGQRHAPEIARMALALLDAVSSFRIRHRPHDQLRLRIGVHTGPVCAGVVGLKMPRYCLF
GDTVNTASRMESNGQALKIHVSSTTKDALDELGCFQLELRGDVEMKGKGKMRTYWLLGEQKGPPGLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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