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Report for CCDS17504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17504.1 Public Mus musculus 3 Zbtb7b 23 108 98 CCDS HistoryNCBI Gene:22724Re-query CCDS DB by CCDS ID:17504.1Re-query CCDS DB by GeneID:22724See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17504.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029677.8 ENSMUSP00000029677.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029677.8Link to Ensembl Protein Viewer:ENSMUSP00000029677.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029677Re-query CCDS DB by Protein ID:ENSMUSP00000029677
Original member Current member EBI ENSMUST00000107432.7 ENSMUSP00000103055.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107432.7Link to Ensembl Protein Viewer:ENSMUSP00000103055.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107432Re-query CCDS DB by Protein ID:ENSMUSP00000103055
Original member Current member EBI ENSMUST00000107433.7 ENSMUSP00000103056.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107433.7Link to Ensembl Protein Viewer:ENSMUSP00000103056.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107433Re-query CCDS DB by Protein ID:ENSMUSP00000103056
Original member Current member EBI ENSMUST00000107435.7 ENSMUSP00000103058.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107435.7Link to Ensembl Protein Viewer:ENSMUSP00000103058.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107435Re-query CCDS DB by Protein ID:ENSMUSP00000103058
Original member NCBI NM_001355211.1 NP_001342140.1 Updated not alive Link to Nucleotide Sequence:NM_001355211.1Link to Protein Sequence:NP_001342140.1Re-query CCDS DB by Nucleotide ID:NM_001355211Re-query CCDS DB by Protein ID:NP_001342140
Current member NCBI NM_001355211.2 NP_001342140.1 Accepted alive Link to Nucleotide Sequence:NM_001355211.2Link to Protein Sequence:NP_001342140.1Re-query CCDS DB by Nucleotide ID:NM_001355211Re-query CCDS DB by Protein ID:NP_001342140Link to BLAST:NP_001342140.1
Original member NCBI NM_001355212.1 NP_001342141.1 Updated not alive Link to Nucleotide Sequence:NM_001355212.1Link to Protein Sequence:NP_001342141.1Re-query CCDS DB by Nucleotide ID:NM_001355212Re-query CCDS DB by Protein ID:NP_001342141
Current member NCBI NM_001355212.2 NP_001342141.1 Accepted alive Link to Nucleotide Sequence:NM_001355212.2Link to Protein Sequence:NP_001342141.1Re-query CCDS DB by Nucleotide ID:NM_001355212Re-query CCDS DB by Protein ID:NP_001342141Link to BLAST:NP_001342141.1
Original member NCBI NM_009565.5 NP_033591.2 Updated not alive Link to Nucleotide Sequence:NM_009565.5Link to Protein Sequence:NP_033591.2Re-query CCDS DB by Nucleotide ID:NM_009565Re-query CCDS DB by Protein ID:NP_033591
Current member NCBI NM_009565.6 NP_033591.2 Accepted alive Link to Nucleotide Sequence:NM_009565.6Link to Protein Sequence:NP_033591.2Re-query CCDS DB by Nucleotide ID:NM_009565Re-query CCDS DB by Protein ID:NP_033591Link to BLAST:NP_033591.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342140.1 544 Q64321 544 100% 0 0
NP_001342141.1 544 Q64321 544 100% 0 0
NP_033591.2 544 Q64321 544 100% 0 0

Chromosomal Locations for CCDS 17504.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89379526 89379994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89380344 89381509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGGGGAGCCCCGAGGATGACCTGATTGGAATCCCATTCCCAGACCACAGCAGCGAGCTCCTGAGCTGCC
TGAACGAGCAGCGCCAGCTGGGCCATCTGTGCGACCTCACCATCAGGACGCAGGGTCTTGAGTACCGCAC
CCACAGGGCTGTGCTGGCTGCCTGTAGCCACTACTTCAAGAAGCTCTTTACGGAGGGAGGAGGGGGAACC
GTGATGGGAACAGGGGGTGGTGGGACGGCTTCTGGGGGAGCAGGGGCCGGTGTGTGTGAGCTGGACTTTG
TAGGGCCAGAGGCCCTAGGTGCCCTGCTCGAGTTTGCTTACACAGCCACACTGACCACCAGCAGCGCCAA
TATGCCGGCTGTACTCCAAGCTGCTCGGCTACTGGAAATCCCGTGTGTCATCGCTGCTTGCATGGAGATT
CTACAAGGCAGTGGGCTGGAAGCCCCCAGCCCCGATGAGGATGACTGTGAGCGAGCCCGACAGTACCTGG
AGGCTTTTGCCACTGCCACCACCACAGCCTCAACCTCAGGAATGCCCAACGGTGAAGACAGCCCTCCACA
GGTGCCCCTCCTACCGCCGCCGCCACCGCCACCTCGACCTGTTGCCCGTCGCAGCCGCAAACCCCGGAAA
GCTTTTCTTCAAACCAAAGGGGCCCGAGCAAACCATCTGGTCCCTGAGGCACCCACAGTACTCACCCATC
CCTTGACCTACGAAGAAGAAGAGATGGTTGGTAGATTGGGTAACAGTGGGGGCAGTGGGCTCGGAGATAG
CTATAGTCCTCCTACAGGTGCCGCCTCACCTGCCGAGGGGCCCCTGAACTATGAAGTCTTTGAAGGTGAG
GAAGAAGAGGAGGAGATGGCATACCCCCCAGGCTACGGGCTAGCCCAGAGTAATGAGCCCTCGCTATCAC
CAGAGGAGCTGGGCTCAGATGAAGATCCCATCGACCCCGACCTGATGGCTTACCTAAGTTCGCTGCACCA
GGACGCCCTGACACCAGGCCTGGATGGCCAAGACAAGCTGGTGCGTAAACGCCGTTCACAGATGCCCCAA
GAGTGCCCAGTCTGTCACAAGATAATCCACGGGGCAGGCAAACTGCCTCGGCACATGAGGACCCACACTG
GTGAGAAGCCCTTTGCCTGTGAGGTCTGCGGCGTCCGCTTCACCAGGAATGACAAGCTGAAGATCCACAT
GCGGAAGCACACAGGAGAACGCCCCTACTCGTGCCCCCACTGCCCAGCCCGCTTCCTGCATAGCTACGAC
CTCAAGAACCACATGCACCTGCACACCGGGGACCGGCCCTATGAGTGCCACCTGTGCCACAAGGCCTTCG
CCAAGGAGGACCACCTGCAGCGCCATCTCAAGGGTCAGAACTGCCTGGAGGTGCGCACCCGAAGGCGCCG
CAAGGATGACGTGGCAGCCCCTCACTACCCACCGCCCTCGACCACCACCTCATCCCCTGCTGGCCTCGAC
CTTTCCAATGGCCACCTGGACACCTTCCACCTCTCTCTGGCTCGATTCTGGGAGCAGTCGGCCACCACGG
GACCCCCAGTCACTACACAAGGGCCCCCTGAGGAGGAGGAAGAGGAAGGGACACCCACCACACCACAGGC
CGAAGGTGCCATGGAGTCCTCTTAA

Translation (544 aa):
MGSPEDDLIGIPFPDHSSELLSCLNEQRQLGHLCDLTIRTQGLEYRTHRAVLAACSHYFKKLFTEGGGGT
VMGTGGGGTASGGAGAGVCELDFVGPEALGALLEFAYTATLTTSSANMPAVLQAARLLEIPCVIAACMEI
LQGSGLEAPSPDEDDCERARQYLEAFATATTTASTSGMPNGEDSPPQVPLLPPPPPPPRPVARRSRKPRK
AFLQTKGARANHLVPEAPTVLTHPLTYEEEEMVGRLGNSGGSGLGDSYSPPTGAASPAEGPLNYEVFEGE
EEEEEMAYPPGYGLAQSNEPSLSPEELGSDEDPIDPDLMAYLSSLHQDALTPGLDGQDKLVRKRRSQMPQ
ECPVCHKIIHGAGKLPRHMRTHTGEKPFACEVCGVRFTRNDKLKIHMRKHTGERPYSCPHCPARFLHSYD
LKNHMHLHTGDRPYECHLCHKAFAKEDHLQRHLKGQNCLEVRTRRRRKDDVAAPHYPPPSTTTSSPAGLD
LSNGHLDTFHLSLARFWEQSATTGPPVTTQGPPEEEEEEGTPTTPQAEGAMESS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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