NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17299.1 Public Mus musculus 3 Mrpl47 23 108 98 CCDS HistoryNCBI Gene:74600Re-query CCDS DB by CCDS ID:17299.1Re-query CCDS DB by GeneID:74600See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17299.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043966.7 ENSMUSP00000048078.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043966.7Link to Ensembl Protein Viewer:ENSMUSP00000048078.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043966Re-query CCDS DB by Protein ID:ENSMUSP00000048078
Original member Current member NCBI NM_029017.2 NP_083293.1 Accepted alive Link to Nucleotide Sequence:NM_029017.2Link to Protein Sequence:NP_083293.1Re-query CCDS DB by Nucleotide ID:NM_029017Re-query CCDS DB by Protein ID:NP_083293Link to BLAST:NP_083293.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083293.1 252 Q8K2Y7 252 100% 0 0

Chromosomal Locations for CCDS 17299.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 32727594 32727717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32728432 32728527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32730081 32730211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32731160 32731256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32733589 32733649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32734108 32734259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32736642 32736739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (759 nt):
ATGGCTGCGACCAGTCTAGTGGGTATTTGTAGAAGAGCCTCAGCGTTCCTGAAGGCAGCTTGTTCCCTAG
TAAATCCCAAGGACGCTGCTCACTCGGGTTGCAGGTCTTCTCTTAGTTTGTTACATAAGAACACACCACA
TGTCACATCTTTTCTCCAGTGTAAATTACTTCATACCACGTTGTCAAGGAAAGGACTGGAAGAATTTTTT
GATGACCCAAAGAATTGGGGGGAAGAAAAAGTCAAATCTGGAGCTTCATGGACCTGCCAGCAGCTGAGGA
ACAAAAGTAACGAAGACTTACATAAGCTTTGGTATGTCCTTCTGAAGGAAAGAAACATGCTTCTAACTCT
GGAGCAGGAGGCCAAGCGACAGAGGTTGCCAATGCCAAGTCCGGAGCGCTTAGAAAAGGTCGTTGATTCC
ATGGATAACGTAGATAAAGTTGTCCAGGAGAGGGAAGATGCTCTAAGGCTTCTTCAGACCGGTCAAGAAA
AGCCCAGACCCGGTGCTTGGAGAAGGGACATCTTTGGACGAATTGTCTGGCACAAATTCAAGCAGTGGCC
TATACCTTGGTACCTAAATAAAAGATACAACAGGAGGCGGTTCTTCGCAATGCCTTATGTGGATCGCTTT
ATCAGACTAAGAATTGAGAAACACGCCCGCATTGAAGCAAGAAAGAGAAGTTTACAGAAAAAGAAAGAAA
AAATTCTCCATGCAAAGTTCCCACATCTCTCTCAAGAACGGAAATCAAGTAGTGTCTAA

Translation (252 aa):
MAATSLVGICRRASAFLKAACSLVNPKDAAHSGCRSSLSLLHKNTPHVTSFLQCKLLHTTLSRKGLEEFF
DDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQRLPMPSPERLEKVVDS
MDNVDKVVQEREDALRLLQTGQEKPRPGAWRRDIFGRIVWHKFKQWPIPWYLNKRYNRRRFFAMPYVDRF
IRLRIEKHARIEARKRSLQKKKEKILHAKFPHLSQERKSSSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH