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Report for CCDS17251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17251.1 Public Mus musculus 3 Car2 23 108 98 CCDS HistoryNCBI Gene:12349Re-query CCDS DB by CCDS ID:17251.1Re-query CCDS DB by GeneID:12349See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17251.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029078.8 ENSMUSP00000029078.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029078.8Link to Ensembl Protein Viewer:ENSMUSP00000029078.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029078Re-query CCDS DB by Protein ID:ENSMUSP00000029078
Original member Current member NCBI NM_001357334.1 NP_001344263.1 Accepted alive Link to Nucleotide Sequence:NM_001357334.1Link to Protein Sequence:NP_001344263.1Re-query CCDS DB by Nucleotide ID:NM_001357334Re-query CCDS DB by Protein ID:NP_001344263Link to BLAST:NP_001344263.1
Original member Current member NCBI NM_009801.5 NP_033931.4 Accepted alive Link to Nucleotide Sequence:NM_009801.5Link to Protein Sequence:NP_033931.4Re-query CCDS DB by Nucleotide ID:NM_009801Re-query CCDS DB by Protein ID:NP_033931Link to BLAST:NP_033931.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344263.1 260 P00920 260 100% 0 0
NP_033931.4 260 P00920 260 100% 0 0

Chromosomal Locations for CCDS 17251.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 14886753 14886786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14887834 14888031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14895022 14895140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14895535 14895627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14896700 14896762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14897914 14898069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14899971 14900090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGTCCCACCACTGGGGATACAGCAAGCACAACGGACCAGAGAACTGGCACAAGGACTTCCCCATTGCCA
AT
GGAGACCGGCAGTCCCCTGTGGACATTGACACAGCAACTGCCCAGCATGACCCTGCCCTACAGCCTCT
G
CTCATATCTTATGATAAAGCTGCGTCCAAGAGCATTGTCAACAACGGCCACTCCTTTAACGTTGAGTTT
GAT
GACTCTCAGGACAATGCAGTGCTGAAAGGAGGACCCCTCAGTGACTCCTACAGATTGATCCAGTTTC
AC
TTTCACTGGGGCTCATCTGATGGCCAGGGCTCTGAGCACACTGTGAACAAAAAAAAATATGCTGCAGA
G
CTTCACTTGGTTCACTGGAACACCAAATATGGGGACTTTGGAAAAGCTGTGCAGCAACCGGATGGATTG
GCT
GTTTTGGGTATTTTTTTGAAGATTGGACCTGCCTCACAAGGCCTTCAGAAAGTCCTTGAAGCACTGC
AT
TCCATTAAAACAAAGGGGAAGCGTGCGGCCTTTGCTAACTTCGATCCTTGCTCCCTTCTTCCTGGAAA
C
TTGGACTACTGGACATACCCTGGCTCTCTGACCACTCCGCCTCTGCTGGAATGTGTGACCTGGATCGTG
CTC
AGGGAGCCCATTACTGTCAGCAGCGAGCAGATGTCTCATTTCCGTACGCTGAACTTCAATGAGGAGG
GG
GATGCTGAAGAAGCGATGGTGGACAACTGGCGTCCAGCTCAGCCGCTAAAGAATAGAAAGATCAAAGC
G
TCCTTTAAGTAA


Translation (260 aa):
MSHHWGYSKHNGPENWHKDFPIANGDRQSPVDIDTATAQHDPALQPLLISYDKAASKSIVNNGHSFNVEF
D
DSQDNA
VLKGGPLSDSYRLIQFHFHWGSSDGQGSEHTVNKKKYAAELHLVHWNTKYGDFGKAVQQPDGL
A
VLGIFLK
IGPASQGLQKVLEALHSIKTKGKRAAFANFDPCSLLPGNLDYWTYPGSLTTPPLLECVTWIV
L
REPITVSSEQ
MSHFRTLNFNEEGDAEEAMVDNWRPAQPLKNRKIKASFK



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser