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Report for CCDS17158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17158.1 Public Mus musculus 2 Phactr3 23 108 98 CCDS HistoryNCBI Gene:74189Re-query CCDS DB by CCDS ID:17158.1Re-query CCDS DB by GeneID:74189See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17158.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103066.9 ENSMUSP00000099355.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103066.9Link to Ensembl Protein Viewer:ENSMUSP00000099355.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103066Re-query CCDS DB by Protein ID:ENSMUSP00000099355
Original member Current member NCBI NM_028806.2 NP_083082.1 Accepted alive Link to Nucleotide Sequence:NM_028806.2Link to Protein Sequence:NP_083082.1Re-query CCDS DB by Nucleotide ID:NM_028806Re-query CCDS DB by Protein ID:NP_083082Link to BLAST:NP_083082.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083082.1 558 Q8BYK5-1 558 100% 0 0

Chromosomal Locations for CCDS 17158.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 178142385 178142499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178256113 178256274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178260178 178260255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178269317 178269499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178278897 178279106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178283010 178283184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178283860 178284107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178302685 178302838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178328138 178328193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178331580 178331641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178332822 178332962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178334051 178334127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178335506 178335521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGGCCGCATCCGAGGACGGCAGCAGCTGCCTTGTGTCGCGGGGCCGCTCGCAGAGTGACCCCAGCTTCC
TCAGCGACTCCTCAGCCACCTCCACGGACGCCGGGGAGAACCCAGATGAGATGGACCAAACTCCCCCAGC
ACGCTCAGAGCCTCTGGTCTCAGGGATTCGAACTCCCCCTGTGAGGAGGAACAGCAAGCTGGCCACCCTG
GGCAGGATCTTCAAACCTTGGAAATGGAGGAAAAAGAAAAACGAGAAACTGAAGCAGACGACGTCAGCGC
TGGAGAAGAAGATGGCTGGCAGGCAAGGCCGGGAGGAACTCATCAAGCAGGGACTGCTGGAGATGATGGA
GCAAGATTCTGAAAATAAGGCATGCAGTCCCAAGGAAGGCTCCCAACCTGTGCAGAGTGAGCCGCCCGCT
GGCGAGCAGGAGACGCTGACCTCGGAGGGCGCCCAGCCCGGAAGCCCCTCGGCCAGTGGAACAGATCAGG
TGTCCCAGGATGAGCTTCTGTCCTCCGATGCTCATCTGGATGATACAGCCAATATACCGTCTGCATCCAC
TGCGGAAGAAGCAGACGCTGGCAGCCTCCTGCCCACCACTGATGAGCCCTCTCAAGCCTTAGCTGGGTCT
GACTCCCTGGACAGTCCTCCCAGATCCCTGGAGAGATCTGTGAGCCAGCTCCCCAGCCCTCCACTGCTGC
CCACCCCGCCACCCAAGGCCAGCTCTAAAGCCACAAAAAATGTCACAGGACAAGCTGCGCTCTTCCAAGG
CCCCAGCATGAAGAACAATGAGCCGGCTCTCAGAGGACAGCTTGCCACCCCCACAGGGTCCCCTCATGTC
ACCACTGTCCACCGGCCACTGCCCCCCAGCCGCGTGATGGAGGAGCTGCATAGGGCACTGGCTACAAAGC
ACCGTCAGGACAGTTTTCAAGGGCGGGAATGCAGAGGGTCTCCAAAGAAGCGGATGGATGTGCGTCTGTC
TAGGACGTCCAGCATGGAGCGGGGCAAGGAGAGGGACGAGGCGTGGAGCTTTGACGGGGCCTCAGAGAAC
AAGTGGACGGCTACCAAAGACTCCGAGGAGAACAAGGAGAATCTGATGCTGAGCTCCGAGCTCAAGGATG
ACATGCTCCTGTATCAGGACGAGGAGGCGCTCAATGACTCCATCATCTCGGGAACTTTGCCGAGGAAATG
CAAGAAGGAGTTGCTGGCAGTGAAGCTGAGGAACCGGCCGAGCAAGCAGGAGCTAGAGGACCGGAACATC
TTCCCCAGGAGGACCGATGAGGAGAGACAGGAGATCCGACAGCAGATAGAGATGAAGCTGTCCAAAAGGC
TGAGCCAGAGACCCGCCGTGGAGGAACTGGAGAGAAGAAATATCCTGAAACAAAGGAATGATCAGACAGA
GCAGGAAGAAAGGAGAGAAATCAAGCAAAGATTAACAAGAAAGCTTAACCAGAGACCCACTGTTGATGAA
TTGAGAGACAGAAAAATTCTGATCCGTTTCAGTGATTATGTGGAAGTAGCAAGAGCACAGGACTATGACA
GGAGGGCAGACAAGCCCTGGACAAGACTGTCAGCAGCAGATAAGGCAGCAATTCGTAAAGAATTAAATGA
ATATAAAAGTAACGAAATGGAGGTACACGCATCCAGCAAGCACTTGACAAGATTCCACAGGCCATAG

Translation (558 aa):
MAASEDGSSCLVSRGRSQSDPSFLSDSSATSTDAGENPDEMDQTPPARSEPLVSGIRTPPVRRNSKLATL
GRIFKPWKWRKKKNEKLKQTTSALEKKMAGRQGREELIKQGLLEMMEQDSENKACSPKEGSQPVQSEPPA
GEQETLTSEGAQPGSPSASGTDQVSQDELLSSDAHLDDTANIPSASTAEEADAGSLLPTTDEPSQALAGS
DSLDSPPRSLERSVSQLPSPPLLPTPPPKASSKATKNVTGQAALFQGPSMKNNEPALRGQLATPTGSPHV
TTVHRPLPPSRVMEELHRALATKHRQDSFQGRECRGSPKKRMDVRLSRTSSMERGKERDEAWSFDGASEN
KWTATKDSEENKENLMLSSELKDDMLLYQDEEALNDSIISGTLPRKCKKELLAVKLRNRPSKQELEDRNI
FPRRTDEERQEIRQQIEMKLSKRLSQRPAVEELERRNILKQRNDQTEQEERREIKQRLTRKLNQRPTVDE
LRDRKILIRFSDYVEVARAQDYDRRADKPWTRLSAADKAAIRKELNEYKSNEMEVHASSKHLTRFHRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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