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Report for CCDS17152.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17152.1 Public Mus musculus 2 Ctsz 23 108 98 CCDS HistoryNCBI Gene:64138Re-query CCDS DB by CCDS ID:17152.1Re-query CCDS DB by GeneID:64138See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17152.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016400.8 ENSMUSP00000016400.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016400.8Link to Ensembl Protein Viewer:ENSMUSP00000016400.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000016400Re-query CCDS DB by Protein ID:ENSMUSP00000016400
Original member Current member NCBI NM_022325.5 NP_071720.1 Accepted alive Link to Nucleotide Sequence:NM_022325.5Link to Protein Sequence:NP_071720.1Re-query CCDS DB by Nucleotide ID:NM_022325Re-query CCDS DB by Protein ID:NP_071720Link to BLAST:NP_071720.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071720.1 306 Q9WUU7 306 100% 0 0

Chromosomal Locations for CCDS 17152.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 174427872 174427982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174428578 174428743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174429056 174429206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174433488 174433667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174438165 174438328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174438750 174438898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGCGTCGTCGGGGTCGGTGCAGCAGCTGCCCCTGGTGCTGCTGATGTTGCTGTTGGCGAGTGCGGCAC
GGGCCAGACTCTACTTCCGCTCGGGCCAGACTTGCTACCATCCCATTCGCGGGGACCAGCTGGCTCTGCT
GGGGCGCAGGACTTATCCTCGGCCGCATGAGTACCTGTCCCCAGCGGATCTCCCCAAGAATTGGGACTGG
AGAAATGTGAACGGTGTCAACTATGCCAGCGTCACCAGGAACCAGCACATCCCACAGTACTGTGGTTCCT
GCTGGGCCCACGGCAGCACCAGTGCCATGGCAGACCGAATCAACATCAAGAGGAAAGGTGCATGGCCCTC
CATCCTGCTGTCCGTACAGAATGTCATTGACTGTGGCAATGCTGGCTCTTGTGAAGGGGGCAATGACCTT
CCGGTGTGGGAGTATGCCCACAAGCATGGCATCCCCGATGAGACCTGCAACAACTACCAGGCCAAGGACC
AAGACTGTGACAAGTTTAACCAGTGTGGGACCTGCACTGAATTCAAAGAGTGTCACACCATCCAGAATTA
CACCCTCTGGAGAGTGGGTGATTACGGCTCCCTGTCCGGGAGGGAGAAGATGATGGCCGAGATCTATGCC
AATGGTCCCATCAGCTGCGGGATAATGGCAACAGAGATGATGTCTAACTACACTGGGGGCATCTATGCTG
AGCACCAGGACCAGGCCGTTATCAACCACATCATCTCTGTAGCTGGCTGGGGTGTCAGCAACGATGGCAT
CGAGTACTGGATTGTCCGAAATTCATGGGGCGAACCCTGGGGTGAGAAAGGCTGGATGAGGATCGTGACC
AGCACCTACAAGGGAGGCACAGGTGACAGCTACAACCTTGCCATCGAGAGTGCCTGCACATTTGGGGACC
CCATTGTTTAG

Translation (306 aa):
MASSGSVQQLPLVLLMLLLASAARARLYFRSGQTCYHPIRGDQLALLGRRTYPRPHEYLSPADLPKNWDW
RNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSILLSVQNVIDCGNAGSCEGGNDL
PVWEYAHKHGIPDETCNNYQAKDQDCDKFNQCGTCTEFKECHTIQNYTLWRVGDYGSLSGREKMMAEIYA
NGPISCGIMATEMMSNYTGGIYAEHQDQAVINHIISVAGWGVSNDGIEYWIVRNSWGEPWGEKGWMRIVT
STYKGGTGDSYNLAIESACTFGDPIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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