NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17005.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17005.1 Public Mus musculus 2 Ift52 23 108 98 CCDS HistoryNCBI Gene:245866Re-query CCDS DB by CCDS ID:17005.1Re-query CCDS DB by GeneID:245866See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17005.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018002.12 ENSMUSP00000018002.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018002.12Link to Ensembl Protein Viewer:ENSMUSP00000018002.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000018002Re-query CCDS DB by Protein ID:ENSMUSP00000018002
Original member Current member NCBI NM_001356522.1 NP_001343451.1 Accepted alive Link to Nucleotide Sequence:NM_001356522.1Link to Protein Sequence:NP_001343451.1Re-query CCDS DB by Nucleotide ID:NM_001356522Re-query CCDS DB by Protein ID:NP_001343451Link to BLAST:NP_001343451.1
Original member Current member NCBI NM_172150.5 NP_742162.2 Accepted alive Link to Nucleotide Sequence:NM_172150.5Link to Protein Sequence:NP_742162.2Re-query CCDS DB by Nucleotide ID:NM_172150Re-query CCDS DB by Protein ID:NP_742162Link to BLAST:NP_742162.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343451.1 426 Q62559 426 100% 0 0
NP_742162.2 426 Q62559 426 100% 0 0

Chromosomal Locations for CCDS 17005.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 163022381 163022499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163023350 163023437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163025331 163025460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163025888 163025963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163028031 163028102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163029735 163029861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163031181 163031270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163033235 163033303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163036559 163036713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163040627 163040714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163042691 163042799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163045203 163045360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGGAGAAGGAGCTGCGGAGTACCATTCTTTTCAATGCATACAAAAAGGAGGTGTTTACCACCAACACTG
GCTACAAATCTTTGCAGAAAAGACTTCGGAGTAATTGGAAGATTCAGAGCTTGAAAGATGAAATCACTTC
TGAGAAGTTAATTGGGGTGAAACTATGGATCACAGCTGGACCAAGGGAAAAGTTTACTGCTGCTGAATTT
GAAGTCCTGAAGAAGTATCTTGACAGTGGTGGGGATATCCTTGTGATGCTGGGAGAAGGGGGAGAATCCA
GATTTGATACCAATATTAACTTTCTTCTAGAGGAATACGGAATCATGGTTAATAATGATGCTGTGGTTAG
AAACGTGTATTACAAGTACTTCCATCCTAAGGAAGCTCTGGTTTCAGACGGAGTGTTGAACAGAGAAATT
AGCCGAGCTGCAGGAAAGGCTGTGCCTGGAGTCATTGATGAAGAGAACAGTGGGAACAATGCCCAGGCTC
TCACCTTTGTCTACCCTTTTGGTGCCACATTGAGCGTCATGAAGCCAGCAGTGGCCGTGCTATCCACAGG
CTCTGTCTGCTTCCCACTGAACAGACCCATTCTAGCTTTCTATCACTCAAAGAACCAAGGTTTTGGAAAG
CTGGCAGTGCTTGGTTCGTGTCATATGTTCAGTGACCAATATTTAGATAAAGAAGAAAATAGCAAAATTA
TGGATGTTGTGTTCCAGTGGCTTACAACAGGAGACATCCACCTCAACCAGATTGATGCTGAGGACCCAGA
GATTTCCGACTACACGATGGTACCAGACACAGCCACCCTCTCAGAGCAGCTCCGAGTGTGTCTGCAGGAG
GGCGATGAGAACCCCCGTGACTTTACCACCCTCTTTGACCTGTCCATTTACCAGCTGGACACCACCTGCC
TGCCCAAGGTCATCAAGGCTCACGAGGAACTAAATGTGAAACATGAACCACTTCAGCTCGTCCAACCTCA
GTTTGAGATGCCGCTGCCAGCCCTTCAGCCTGCGGTCTTCCCTCCGAGTTTCCGGGAGTTGCCGCCCCCT
CCCCTGGAGCTGTTTGACCTAGATGAAACATTCTCCTCTGAGAAGGCGCGCCTGGCTCAGATCACCAACA
AGTGTACTGATGAAGACCTGGAATTCTATGTCAGGAAGTGTGGCGACATTCTTGGAGTAACAAGCAAACT
TCCAAAGGATCAACAGGATGCCAAACATATCCTTGAACACATCTTCTTCCAAGTGGTGGAGTTCAAGAAA
CTGAACCAGGAGGCCCACTGA

Translation (426 aa):
MEKELRSTILFNAYKKEVFTTNTGYKSLQKRLRSNWKIQSLKDEITSEKLIGVKLWITAGPREKFTAAEF
EVLKKYLDSGGDILVMLGEGGESRFDTNINFLLEEYGIMVNNDAVVRNVYYKYFHPKEALVSDGVLNREI
SRAAGKAVPGVIDEENSGNNAQALTFVYPFGATLSVMKPAVAVLSTGSVCFPLNRPILAFYHSKNQGFGK
LAVLGSCHMFSDQYLDKEENSKIMDVVFQWLTTGDIHLNQIDAEDPEISDYTMVPDTATLSEQLRVCLQE
GDENPRDFTTLFDLSIYQLDTTCLPKVIKAHEELNVKHEPLQLVQPQFEMPLPALQPAVFPPSFRELPPP
PLELFDLDETFSSEKARLAQITNKCTDEDLEFYVRKCGDILGVTSKLPKDQQDAKHILEHIFFQVVEFKK
LNQEAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH