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Report for CCDS16869.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16869.1 Public Mus musculus 2 Fkbp1a 23 108 98 CCDS HistoryNCBI Gene:14225Re-query CCDS DB by CCDS ID:16869.1Re-query CCDS DB by GeneID:14225See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16869.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044011.11 ENSMUSP00000037206.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044011.11Link to Ensembl Protein Viewer:ENSMUSP00000037206.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000044011Re-query CCDS DB by Protein ID:ENSMUSP00000037206
Original member Current member NCBI NM_001302077.1 NP_001289006.1 Accepted alive Link to Nucleotide Sequence:NM_001302077.1Link to Protein Sequence:NP_001289006.1Re-query CCDS DB by Nucleotide ID:NM_001302077Re-query CCDS DB by Protein ID:NP_001289006Link to BLAST:NP_001289006.1
Original member Current member NCBI NM_008019.3 NP_032045.1 Accepted alive Link to Nucleotide Sequence:NM_008019.3Link to Protein Sequence:NP_032045.1Re-query CCDS DB by Nucleotide ID:NM_008019Re-query CCDS DB by Protein ID:NP_032045Link to BLAST:NP_032045.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289006.1 108 P26883 108 100% 0 0
NP_032045.1 108 P26883 108 100% 0 0

Chromosomal Locations for CCDS 16869.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 151542708 151542744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151542818 151542865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151557386 151557498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151559458 151559586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (327 nt):
ATGGGAGTGCAGGTGGAGACCATCTCTCCTGGAGACGGGCGCACCTTCCCAAAGCGCGGCCAGACCTGCG
TG
GTGCACTACACGGGGATGCTTGAAGATGGAAAGAAATTTGATTCCTCTCGGGACAGAAACAAGCCTTT
T
AAGTTTACACTAGGCAAGCAGGAGGTGATCCGAGGCTGGGAGGAAGGGGTAGCCCAGATGAGTGTGGGT
CAG
AGAGCCAAACTGATAATCTCCTCAGACTATGCCTATGGAGCCACCGGGCACCCAGGCATCATCCCAC
CA
CATGCCACTCTTGTTTTTGATGTGGAGCTTCTAAAACTGGAATGA


Translation (108 aa):
MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFTLGKQEVIRGWEEGVAQMSVG
Q
RAKLIISSDYAYGATGHPGIIPPHATLVFDVELLKLE




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser