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Report for CCDS16572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16572.1 Public Mus musculus 2 Rasgrp1 23 108 98 CCDS HistoryNCBI Gene:19419Re-query CCDS DB by CCDS ID:16572.1Re-query CCDS DB by GeneID:19419See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16572.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102534.10 ENSMUSP00000099593.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102534.10Link to Ensembl Protein Viewer:ENSMUSP00000099593.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102534Re-query CCDS DB by Protein ID:ENSMUSP00000099593
Original member Current member NCBI NM_011246.3 NP_035376.1 Accepted alive Link to Nucleotide Sequence:NM_011246.3Link to Protein Sequence:NP_035376.1Re-query CCDS DB by Nucleotide ID:NM_011246Re-query CCDS DB by Protein ID:NP_035376Link to BLAST:NP_035376.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035376.1 795 Q9Z1S3 795 100% 0 0

Chromosomal Locations for CCDS 16572.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 117282542 117282676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117284853 117285232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117286072 117286224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117286842 117286878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117287824 117287968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117288617 117288726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117289345 117289449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117290316 117290396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117291666 117291941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117293754 117293870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117294709 117294882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117298462 117298615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117300443 117300574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117301961 117302023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117305778 117305883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117338276 117338460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117342675 117342709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2388 nt):
ATGGGAACCCTGGGCAAGGCGAGAGAGGCTCCGCGGAAACCTTGCCATGGCTCCAGAGCTGGCCCCAAAG
CA
AGACTAGAGGCCAAATCAACCAACAGCCCTCTCCCTGCCCAGCCCAGCTTGGCCCAGATCACCCAGTT
C
CGAATGATGGTGTCCCTGGGACATTTGGCCAAAGGAGCCAGCCTGGATGATCTTATTGACAGCTGCATT
CAA
TCTTTTGATGCGGATGGAAACCTGTGTCGGAATAACCAACTGTTACAAGTCATGCTAACCATGCACC
GG
ATCATCATCTCCTCAGCCGAGCTGCTACAAAAAGTCATGAATCTATATAAGGATGCCCTGGAAAAGAA
T
TCTCCAGGAGTTTGCCTGAAGATCTGCTATTTTGTCAGGTATTGGATAACAGAATTCTGGATCATGTTC
AAG
ATGGATGCCAGCTTGACCAGCACCATGGAAGAGTTCCAAGACCTGGTGAAAGCCAATGGTGAGGAGA
CC
CACTGCCACCTCATCGACACGACCCAAATTAATTCTCGAGACTGGTCCAGGAAACTGACTCAGAGGAT
A
AAATCGAATACTAGCAAGAAGCGCAAAGTGTCCCTGCTGTTTGACCATCTGGAACCTGAAGAACTGTCT
GAA
CACCTCACCTACCTTGAGTTCAAGTCCTTCCGACGGATATCTTTCTCTGATTACCAAAATTACCTTG
TA
AATAGCTGCGTAAAAGAGAACCCCACCATGGAGAGGTCCATTGCCCTGTGCAATGGCATCTCCCAGTG
G
GTACAACTGATGGTTCTCAGCCGTCCCACCCCGCAGCTCCGGGCAGAGGTCTTCATCAAGTTCATCCAT
GTG
GCTCAGAAACTCCACCAGCTACAGAACTTCAACACGCTGATGGCTGTGATCGGGGGACTGTGTCACA
GC
TCCATCTCCAGGCTTAAGGAAACAAGTTCACATGTCCCACATGAGATCAATAAGGTTCTGGGCGAGAT
G
ACTGAACTGCTGTCCTCCTGCAGAAACTATGACAACTACAGGCGAGCCTATGGGGAGTGCACCCACTTC
AAA
ATCCCCATACTGGGTGTGCACCTCAAGGACCTCATATCCCTGTATGAGGCTATGCCCGACTATCTGG
AA
GATGGGAAGGTGAATGTCCAAAAGCTCCTGGCCCTTTACAATCATATCAATGAATTGGTCCAGCTGCA
G
GAGATGGCCCCACCATTGGATGCCAACAAGGACTTGGTGCATCTGCTGACGTTATCCCTGGATCTATAC
TAT
ACAGAAGATGAAATCTATGAGCTTTCCTATGCCCGGGAGCCGAGGAACCACAGAGCTCCGCCACTGA
CA
CCTTCGAAGCCACCAGTTGTAGTAGACTGGGCCTCTGGAGTGTCTCCCAAACCTGACCCAAAGACCAT
C
AGCAAACACGTCCAAAGGATGGTGGATTCTGTCTTTAAGAACTATGATCTCGACCAGGATGGCTATATC
TCT
CAGGAGGAGTTTGAGAAGATCGCTGCAAGCTTTCCATTTTCCTTCTGTGTGATGGACAAAGATAGGG
AA
GGCCTCATCAGCAGAGACGAGATCACGGCCTACTTCATGAGGGCCAGCTCCATCTATTCCAAGCTGGG
C
CTGGGCTTTCCACACAACTTTCAAGAAACCACTTACCTGAAGCCCACCTTCTGTGACAACTGTGCTGGC
TTT
CTCTGGGGCGTGATCAAGCAAGGCTATCGCTGTAAAGACTGCGGGATGAACTGCCACAAACAGTGCA
AA
GACCTGGTGGTGTTCGAGTGCAAGAAGCGAATCAAGAGCCCAGCAATATCCACAGAGAACATCAGCTC
T
GTGGTACCAATGTCCACCCTTTGTCCACTGGGAACCAAAGATCTGCTCCATGCACCCGAAGAAGGATCT
TTC
ATTTTCCAAAACGGAGAGATTGTGGACCACAGTGAGGAGAGCAAGGATAGGACCATCATGCTCCTCG
GA
GTGTCCTCCCAGAAAATTTCAGTTCGGCTGAAGAGGACTGTTGCCCACAAGAGCACCCAAACAGAATC
G
TTCCCGTGGGTTGGTGGCGAGACGACCCCTGGTCACTTTGTGCTGTCTTCTCCAAGGAAGTCGGCGCAG
GGC
GCTCTTTATGTGCACAGTCCAGCATCTCCATGCCCCAGCCCAGCACTGGTCCGAAAGCGGGCATTCG
TC
AAGTGGGAGAACAAAGAGTCCCTTATAAAACCAAAACCAGAACTTCACCTCCGGCTCCGGACCTACCA
A
GAACTGGAACAGGAAATAAATACCCTGAAAGCAGATAACGATGCTCTGAAGATCCAACTGAAGTACGCA
CAG
AAGAAAATAGAATCCCTGCAGCTTGGGAAAAGCAATCATGTCTTAGCCCAGATGGACCACGGTGATA
GT
GCTTAA


Translation (795 aa):
MGTLGKAREAPRKPCHGSRAGPKARLEAKSTNSPLPAQPSLAQITQFRMMVSLGHLAKGASLDDLIDSCI
Q
SF
DADGNLCRNNQLLQVMLTMHRIIISSAELLQKVMNLYKDALEKNSPGVCLKICYFVRYWITEFWIMF
K
MDASLTSTMEEFQDLVKANGEETHCHLIDTTQ
INSRDWSRKLTQRIKSNTSKKRKVSLLFDHLEPEELS
E
HLTYLEFKSFRRIS
FSDYQNYLVNSCVKENPTMERSIALCNGISQWVQLMVLSRPTPQLRAEVFIKFIH
V
AQ
KLHQLQNFNTLMAVIGGLCHSSISRLKETSSHVPHEINKVLGEMTELLSSCRNYDNYRRAYGECTHF
K
IPILGVHLKDLISLYEAMPDYLEDGKVNVQKLLALYNHINELVQLQEMAPPLDANKDLVHLLT
LSLDLY
Y
TEDEIYELSYAREPRNHRAP
PLTPSKPPVVVDWASGVSPKPDPKTISKHVQRMVDSVFKNYDLDQDGYI
S
QEEFEKIAASFPFSFCVMDKD
REGLISRDEITAYFMRASSIYSKLGLGFPHNFQETTYLKPTFCDNCAG
F
LWGVIKQGYRCKDCGMNCHKQCKDLVVFECKKRIKSPAISTENISSVVPMSTLCPLGTKDLLHAPEEGS
F
IFQNGEIVDHSEESKDRTIMLLGVSSQKISVRLKRTVAHKSTQTESFPWVGGETTPGHFVLSSPRKSAQ
G
ALYVHSPASPCPSPALVRKRAFVKWENKESLIKPKPELHLRLRTYQELEQ
EINTLKADNDALKIQLKYA
Q
KKIESLQLGKSNHVLAQMDHGDSA




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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