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Report for CCDS16319.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16319.1 Public Mus musculus 2 Or9m2 23 108 98 CCDS HistoryNCBI Gene:258639Re-query CCDS DB by CCDS ID:16319.1Re-query CCDS DB by GeneID:258639See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16319.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102622.1 ENSMUSP00000099682.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102622.1Link to Ensembl Protein Viewer:ENSMUSP00000099682.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102622Re-query CCDS DB by Protein ID:ENSMUSP00000099682
Original member Current member NCBI NM_146645.2 NP_666856.2 Accepted alive Link to Nucleotide Sequence:NM_146645.2Link to Protein Sequence:NP_666856.2Re-query CCDS DB by Nucleotide ID:NM_146645Re-query CCDS DB by Protein ID:NP_666856Link to BLAST:NP_666856.2

Chromosomal Locations for CCDS 16319.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87990113 87991054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGAGTGTGGAGAACAGCACTGTGAAGACTGAATTCTATCTCCTGGGATTCAGTGATCATCCAGAGCTCC
AGAGTCTCCTATTTGCTGTGTTTTTCTCCATCTACTCCATTACTCTGATGGGGAATATTGGCATGATTGT
ATTGATCACAGTCAGTCCTAATTTACACATTCCCATGTACTTTTTCCTCTGGATGCTGTCCTTCATAGAT
GCATGTTCCTCCTCTGTCATTGCCCCCAAATTACTTGTGGATTTGATTTCTGACAAGAAGGTGATTTCTT
ACAATGGCTGTGCTACACAGTTTTATTTTTGCTGCTCTCTGGTTGATACAGAATCTTTCCTGTTGGCTGC
CATGGCTTATGACAGGTACATTGCAATCTGTAACCCCCTGCTCTATACTGTAATTATGTCCAAGAGGGTC
TGTACTCAGCTGGCATTTGAAGCATTCTTGGGTGGAACTATGAGTTCAATAATCCATACAACTAACACTT
TCCAGTTGTCATTCTGCTCCAAAGAAATTAACCATTTCTTTTGTGATATGACTCCACTCTTCTCTCTGTC
CTGCTTTGATACTTACACACATGACATTATACTGGTGTTTTTCACAAGTTTGGTGGAAGCTGTCTGTCTT
CTTGCTGTTCTCCTCTCCTATATGTATATTATAGTGGCCATTCTTAAAACAGGTTCTGCAGAGGGAAGAA
AGAAAGGGTTCTCTACTTGTGCTTCTCACCTGGCAGTAATCACCATTTATCATGGCACCCTGATTTTTAT
TTATTTGTGTCCTAGTACAGGCCATTCAATGGATATTGACAAAATGACCTCTGTGTTCTATACATTGATT
ATACCCATGCTTAACCCCTTGATATACAGTCTCAGGAACAAAAATGTCAAATTCGCCTTTAGAAAAATTA
TTAGCAAAAAATTGTTTTTTTTAGTTATTTAA

Translation (313 aa):
MSVENSTVKTEFYLLGFSDHPELQSLLFAVFFSIYSITLMGNIGMIVLITVSPNLHIPMYFFLWMLSFID
ACSSSVIAPKLLVDLISDKKVISYNGCATQFYFCCSLVDTESFLLAAMAYDRYIAICNPLLYTVIMSKRV
CTQLAFEAFLGGTMSSIIHTTNTFQLSFCSKEINHFFCDMTPLFSLSCFDTYTHDIILVFFTSLVEAVCL
LAVLLSYMYIIVAILKTGSAEGRKKGFSTCASHLAVITIYHGTLIFIYLCPSTGHSMDIDKMTSVFYTLI
IPMLNPLIYSLRNKNVKFAFRKIISKKLFFLVI


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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