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Report for CCDS16281.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16281.1 Public Mus musculus 2 Or5aq7 23 108 98 CCDS HistoryNCBI Gene:258766Re-query CCDS DB by CCDS ID:16281.1Re-query CCDS DB by GeneID:258766See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16281.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099862.1 ENSMUSP00000097448.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099862.1Link to Ensembl Protein Viewer:ENSMUSP00000097448.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099862Re-query CCDS DB by Protein ID:ENSMUSP00000097448
Original member Current member EBI ENSMUST00000215828.2 ENSMUSP00000149161.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215828.2Link to Ensembl Protein Viewer:ENSMUSP00000149161.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215828Re-query CCDS DB by Protein ID:ENSMUSP00000149161
Original member Current member EBI ENSMUST00000213978.1 ENSMUSP00000149374.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213978.1Link to Ensembl Protein Viewer:ENSMUSP00000149374.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213978Re-query CCDS DB by Protein ID:ENSMUSP00000149374
Original member Current member EBI ENSMUST00000216088.2 ENSMUSP00000151207.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216088.2Link to Ensembl Protein Viewer:ENSMUSP00000151207.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216088Re-query CCDS DB by Protein ID:ENSMUSP00000151207
Original member Current member NCBI NM_146770.2 NP_666981.2 Accepted alive Link to Nucleotide Sequence:NM_146770.2Link to Protein Sequence:NP_666981.2Re-query CCDS DB by Nucleotide ID:NM_146770Re-query CCDS DB by Protein ID:NP_666981Link to BLAST:NP_666981.2

Chromosomal Locations for CCDS 16281.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87107447 87108385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGGAATTCGGAATCATACAAGTGTGAAAGAATTCATACTGATCGGCTTAACAGAAAACCCTAATTGGC
AGGTTCCTCTCTTTTTTCTTTTTTGCATAGTTTATTTCATCATTCTTGTGGGTAATTGGGGGATGATCAT
TTTGATTTGGTTAAATGCTCAGCTTCATACCCCAATGTACTTCTTCCTTAGTAACCTCTCTTTCTGTGAC
ATCTGCTATTCTACAATCATTGCTCCTAAAATGCTCATCAATTTTCTATCAGAACACAAGTCTACGAGGC
TGTTTGCCTGTATTCTTCAGAGTTTCTTTTTTGCAGTTTATGTAACCACAGAAGTAATACTCCTGTCTAT
GATGGCCTATGATCGCTATGTGGCAATTGCAAATCCCTTAATGTATACTGTTATCATGACAAACAACATC
TGCACTCAAATGGTACTTGCAAGTTACTTGGGTGGCCTCATAAATTCCATGATTCACACAATAGGTTTAC
TCAAACTAGACTTCTGTGGTCCAAACATTGTGAATCATTTCTTCTGTGATGTTCCTCCTCTTTTGAAGCT
TGCATGCTCTGATGCACACATCAATGAGATGCTGCTTTTGGTCTTCTCAGGTGTGTTTGCTATTTCCACT
TTCATCATTGTCATGGTGTCCTATATCCACATTATCATTGCCATCCTGAGAATCCGCTCAGCTGAGGGGA
GGCGTAAAGCCTTCTCCACTTGTGCCTCACACCTAACAGCTGTGGCATTATTTTATGGATCTTTGACATT
TAACTATATCCAGCCAAGTTCTCAATACTCCATGGAACAGGAAAAGCTCTCTGCTGTGTTTTACACCTTG
GTCATCCCCATGCTGAACCCTCTGATTTACAGCCTGAGGAACAAGGATGTAAAGGAAGCAGCCAAGAAGT
TAATTTGTGGGGAGAGAAATGCCCCTTGA

Translation (312 aa):
MGIRNHTSVKEFILIGLTENPNWQVPLFFLFCIVYFIILVGNWGMIILIWLNAQLHTPMYFFLSNLSFCD
ICYSTIIAPKMLINFLSEHKSTRLFACILQSFFFAVYVTTEVILLSMMAYDRYVAIANPLMYTVIMTNNI
CTQMVLASYLGGLINSMIHTIGLLKLDFCGPNIVNHFFCDVPPLLKLACSDAHINEMLLLVFSGVFAIST
FIIVMVSYIHIIIAILRIRSAEGRRKAFSTCASHLTAVALFYGSLTFNYIQPSSQYSMEQEKLSAVFYTL
VIPMLNPLIYSLRNKDVKEAAKKLICGERNAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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