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Report for CCDS15665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15665.1 Public Mus musculus 2 Camk1d 23 108 98 CCDS HistoryNCBI Gene:227541Re-query CCDS DB by CCDS ID:15665.1Re-query CCDS DB by GeneID:227541See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15665.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044009.13 ENSMUSP00000037028.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044009.13Link to Ensembl Protein Viewer:ENSMUSP00000037028.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000044009Re-query CCDS DB by Protein ID:ENSMUSP00000037028
Original member Current member NCBI NM_177343.4 NP_796317.2 Accepted alive Link to Nucleotide Sequence:NM_177343.4Link to Protein Sequence:NP_796317.2Re-query CCDS DB by Nucleotide ID:NM_177343Re-query CCDS DB by Protein ID:NP_796317Link to BLAST:NP_796317.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796317.2 385 Q8BW96-1 385 100% 0 0

Chromosomal Locations for CCDS 15665.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 5298983 5299101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5301496 5301613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5303291 5303378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5310992 5311070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5313089 5313201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5339182 5339257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5354669 5354795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5361989 5362127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5445070 5445144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5565649 5565780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5714146 5714237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGCCCGGGAGAACGGCGAGAGCAGCTCCTCCTGGAAAAAGCAAGCAGAAGACATTAAGAAGATCTTCG
AGTTCAAGGAGACCCTCGGAACTGGGGCCTTTTCTGAAGTTGTTTTAGCCGAGGAGAAAGCTACTGGGAA
GCTCTTCGCAGTGAAGTGCATCCCGAAGAAGGCGCTGAAGGGCAAGGAGAGCAGCATCGAGAACGAGATT
GCCGTGCTTAGAAAGATTAAGCATGAAAACATTGTTGCCTTGGAAGATATTTATGAAAGCCCAAATCACC
TCTACCTGGTCATGCAACTTGTGTCTGGTGGAGAACTCTTCGATCGGATAGTGGAGAAGGGGTTTTACAC
AGAGAAAGATGCCAGCACTCTCATCCGCCAGGTCCTGGATGCCGTATACTATCTCCACAGAATGGGCATT
GTCCACAGGGACCTCAAGCCGGAGAATCTCTTATACTACAGTCAAGACGAGGAGTCCAAAATAATGATCA
GTGACTTTGGCTTGTCGAAAATGGAGGGCAAAGGAGATGTGATGTCCACGGCCTGCGGGACCCCAGGCTA
TGTTGCTCCGGAAGTTCTCGCCCAGAAACCGTACAGCAAAGCTGTGGACTGCTGGTCCATCGGGGTGATC
GCCTATATCTTGCTCTGTGGTTACCCTCCTTTTTATGATGAAAATGACTCGAAGCTGTTTGAACAGATCC
TCAAGGCAGAATATGAGTTTGATTCCCCCTACTGGGATGACATCTCCGACTCTGCCAAAGACTTCATTCG
GAATCTGATGGAGAAAGACCCAAATAAAAGATACACTTGTGAGCAGGCAGCTCGACACCCATGGATTGCT
GGTGACACAGCCCTTAGCAAAAACATTCACGAATCTGTCAGTGCCCAGATCCGGAAGAATTTTGCAAAGA
GCAAATGGAGACAAGCGTTTAACGCCACGGCAGTCGTGAGACATATGCGGAGGCTCCAGCTTGGCAGCAG
CCTGGACAGTTCAAATGCAAGTGTCTCAAGCAACCTCAGTTTGGCCAGCCAAAAAGATTGTCTGGCACCT
TCCACGCTCTGTAGTTTCCTTTCTTCTTCGTCGGGGGTCGCAGGAGTCGGAGCTGAGAGGAGACCCAGGC
CCACCACTGTGACAACAGGGCACACTGGAAGCAAGTGA

Translation (385 aa):
MARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEI
AVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGI
VHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVI
AYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIA
GDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRRLQLGSSLDSSNASVSSNLSLASQKDCLAP
STLCSFLSSSSGVAGVGAERRPRPTTVTTGHTGSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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