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Report for CCDS15468.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15468.1 Public Mus musculus 1 Uhmk1 23 108 98 CCDS HistoryNCBI Gene:16589Re-query CCDS DB by CCDS ID:15468.1Re-query CCDS DB by GeneID:16589See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15468.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027979.13 ENSMUSP00000027979.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027979.13Link to Ensembl Protein Viewer:ENSMUSP00000027979.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027979Re-query CCDS DB by Protein ID:ENSMUSP00000027979
Original member Current member NCBI NM_010633.4 NP_034763.3 Accepted alive Link to Nucleotide Sequence:NM_010633.4Link to Protein Sequence:NP_034763.3Re-query CCDS DB by Nucleotide ID:NM_010633Re-query CCDS DB by Protein ID:NP_034763Link to BLAST:NP_034763.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034763.3 419 P97343 419 100% 0 0

Chromosomal Locations for CCDS 15468.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 170199867 170200013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170205115 170205203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170207114 170207212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170207346 170207422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170208655 170208749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170211031 170211222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170212236 170212528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170214973 170215240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGGCGGGGTCCGGCTGCGCGTGGGGCGCCGAGCCGCCGCGCTTCCTGGAGGCCTTCGGGCGGCTGTGGC
AGGTCCAGAGCCGCCTGGGCAGCGGCTCGTCGGCCTCGGTGTACCGGGTGCGGTGCTGCGGTACCCCGGG
CTCGCCCCCCGGCGCCCTCAAGCAGTTCCTGCCTCCGGGAACCACCGGGGCTGCGGCCTCGGCCGCGGAG
TATGGTTTCCGCAAAGAGAGGGCGGCGCTGGAGCAGTTGCAGGGTCACAGGAACATCGTGACTTTATATG
GAGTCTTTACCATACACTTCTCTCCCAATGTGCCATCACGCTGTCTGCTGCTTGAACTCCTGGATGTCAG
TGTTTCGGAATTGCTTTTATATTCCAGTCATCAGGGCTGCTCCATGTGGATGATACAGCACTGTGCCCGA
GATGTTCTGGAGGCCCTCGCTTTTCTTCACCATGAGGGCTACGTCCATGCAGACCTCAAACCACGAAACA
TCCTGTGGAGTGCGGAGAATGAGTGTTTTAAGCTTATTGACTTTGGACTCAGCTTCAAAGAAGGCAATCA
GGACGTAAAGTATATTCAGACAGACGGGTATCGCGCTCCTGAAGCAGAGCTGCAGAACTGCTTGGCCCAG
GCCGGCCTGCAGAGTGATACAGAATGTACCTCAGCTGTTGATCTGTGGAGCCTCGGAATCATTTTACTGG
AAATGTTCTCAGGAATGAAGCTGAAACATACAGTCAGATCTCAGGAATGGAAGGCAAACAGTTCTGCTAT
TATTGATCATATATTTGCCAGTAAAGCAGTGGTGAATGCCGCAATTCCAGCCTATCACCTCAGAGACCTT
ATCAAAAGCATGCTTCATGATGACCCGGGCAGAAGAATCCCTGCTGAGATGGCATTGTGCAGCCCATTCT
TTAGCATTCCTTTTGCCCCTCATATTGAAGATCTGGTGATGCTTCCGACTCCAGTGCTCAGGCTCCTCAA
TGTGCTGGATGATGATTACCTTGAAAATGAAGATGAATATGAAGATGTTGTAGAAGATGTGAAAGAGGAG
TGTCAGAAATATGGACCAGTGGTTTCTCTGCTTGTTCCAAAGGAAAATCCTGGCAGAGGACAAGTCTTCG
TTGAGTACGCGAACGCTGGTGATTCCAAAGCTGCTCAGAAGTTGCTGACTGGGAGGATGTTTGACGGGAA
GTTTGTTGTGGCTACATTCTACCCGCTGAGTGCCTACAAGAGGGGATATCTTTATCAAACCTTGCTTTAA

Translation (419 aa):
MAGSGCAWGAEPPRFLEAFGRLWQVQSRLGSGSSASVYRVRCCGTPGSPPGALKQFLPPGTTGAAASAAE
YGFRKERAALEQLQGHRNIVTLYGVFTIHFSPNVPSRCLLLELLDVSVSELLLYSSHQGCSMWMIQHCAR
DVLEALAFLHHEGYVHADLKPRNILWSAENECFKLIDFGLSFKEGNQDVKYIQTDGYRAPEAELQNCLAQ
AGLQSDTECTSAVDLWSLGIILLEMFSGMKLKHTVRSQEWKANSSAIIDHIFASKAVVNAAIPAYHLRDL
IKSMLHDDPGRRIPAEMALCSPFFSIPFAPHIEDLVMLPTPVLRLLNVLDDDYLENEDEYEDVVEDVKEE
CQKYGPVVSLLVPKENPGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGYLYQTLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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