NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15227.1 Public Mus musculus 1 Ptpn4 23 108 98 CCDS HistoryNCBI Gene:19258Re-query CCDS DB by CCDS ID:15227.1Re-query CCDS DB by GeneID:19258See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15227.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064091.11 ENSMUSP00000067614.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064091.11Link to Ensembl Protein Viewer:ENSMUSP00000067614.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000064091Re-query CCDS DB by Protein ID:ENSMUSP00000067614
Original member Current member NCBI NM_019933.2 NP_064317.2 Accepted alive Link to Nucleotide Sequence:NM_019933.2Link to Protein Sequence:NP_064317.2Re-query CCDS DB by Nucleotide ID:NM_019933Re-query CCDS DB by Protein ID:NP_064317Link to BLAST:NP_064317.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064317.2 926 Q9WU22 926 100% 0 0

Chromosomal Locations for CCDS 15227.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 119659831 119659917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119667514 119667649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119675549 119675697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119678755 119678883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119680049 119680195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119682484 119682545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119682705 119682795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119684467 119684633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119687610 119687766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119691601 119691657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119691746 119691829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119692750 119692909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119706155 119706313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119707776 119707901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119715947 119716015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119721864 119722036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119726033 119726096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119741355 119741443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119743352 119743439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119765031 119765151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119765429 119765481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119765878 119765922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119773049 119773127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119773229 119773271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119783482 119783589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119802323 119802460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2781 nt):
ATGACCGCACGTTTCCGATTGCCTGCTGGCAGAACCTACAATGTCCGAGCATCAGAGTTGGCCCGAGACA
GACAGCATACAGAGGTCGTTTGCAACATTCTTCTTCTGGATAACACTGTACAGGCTTTCAGAGTTAACAA
ACATGATCAGGGGCAAGTTCTGTTGGATATAGTCTTCAAGCATCTTGATTTGACTGAGCGAGACTATTTT
GGTTTACAGTTGGCTGACGATTCCACAGATAACCCAAGGTGGCTGGATCCAAACAAACCAATAAGGAAGC
AGCTAAAGAGAGGATCACCTTACAATTTGAACTTTAGAGTCAAATTCTTTGTAAGTGACCCCAACAAGTT
ACAAGAAGAGTATACAAGGTATCAGTACTTTTTGCAAATTAAGCAAGACATTCTTACTGGAAGATTATCC
TGTCCTTGTAACACTGCTGCCCTTTTAGCATCATTTGCTGTTCAGTCTGAACTTGGAGACTACAATCAGT
CAGAAAACTTGGCAGGCTACCTCTCAGATTATTCTTTCATTCCTAATCAACCTCAAGATTTTGAGAAAGA
AATTGCAAAGTTACATCAGCAGCACGTTGGCCTATCTCCTGCAGAAGCAGAATTTAATTACCTAAACGCG
GCACGTACCTTAGAACTCTATGGAGTTGAATTTCACTATGCAAGGGATCAAAGTAACAATGAAATCCTGA
TTGGAGTGATGTCAGGAGGAATTCTGATTTATAAGAACAGGGTACGGATGAATACTTTTCTGTGGTTGAA
GATTGTAAAAATTTCTTTTAAATGCAAACAGTTTTTTATTCAACTTAGAAAAGAGTTGCATGAATCTAGA
GAAACATTACTGGGATTTAATATGGTGAATTATAGAGCATGTAAAACTTTGTGGAAAGCGTGTGTAGAAC
ATCATACATTCTTCCGCCTGGATAGACCACTTCCACCTCAAAAAAATTTTTTTGCACATTATTTTACATT
GGGTTCCAAATTCCGGTACTGTGGGAGAACTGAAGTCCAGTCAGTTCAATATGGCAAAGAAAAGGCAAAT
AAAGACAGGGTATTTGCAAGATCTCCAAGTAAGCCTTTGGCACGGAAATTAATGGATTGGGAAGTAGTCA
GCAGAAATTCATTATCTGATGACAGGTTAGAAACACAAAGCCTCCCATCCCGGTCTCCACCTGGAACTCC
CAACCATCGGAATTCTTCATTCACACAAGAGGCAACCCGGGTTCGGCCGTCTTCAGTTGGTCATTTGGTA
GACCATGTGGTTCACATGTCCCCCAGTGAGGATTTTGTAAGTCAGAGATCTCCATCATCAACGCAAGCTA
ATAGCATAGTTCTGGAGTCATCACCATCACAAGAGACCCCTGAAGATGGGCAGCCACCAGCTTTACCACC
CAAACAATCTAAGAAAAATAGTTGGAACCAAATTCATTTTTCAAACTCTCAGCAAGATCTAGTCACCCAT
ACTAATGAATCCTTTGATGTGCCCTCTTCCCCTGAAAAGTCCACTCCTAATGGTGGCATTCCACATGATA
ACCTTGTTCTAATCAAAATGAAACCTGATGAAAATGGAAGGTTTGGATTCAATGTAAAGGGAGGATATGA
TCAGAAGATGCCTGTAATTGTTTCCCGGGTAGCACCAGGAACACCTGCTGACCTCTGTGTCCCTCGCTTG
AATGAAGGGGACCAAGTGGTACTAATAAATGGTCGGGACATTGCAGAACATACCCATGATCAAGTAGTCT
TGTTTATTAAAGCTAGCTGTGAGAAACATTCTGGGGAACTCGTGCTCCTAGTCCGACCTAATGCTGTATA
TGATGTAGTGGAAGAAAAACTAGAAAGTGAACCAGACTTCCAGTATATTCCTGAGAAAGCCCCACTAGAT
AGTGTCCATCAAGATGACCATTCCTTGCGGGAGTCAATGATCCAGCTAGCTGAGGGGCTTATCACTGGAA
CAGTACTGGCACAGTTTGATCAACTCTATCGGAAAAAACCTGGAATGACAATGTCTTGTGCCAAATTACC
TCAGAACATTTCCAAAAACAGATACAGAGATATTTCACCTTATGATGCTACACGGGTCCTTTTAAAAGGT
AATGAAGACTACATCAATGCAAACTATATAAATATGGAAATTCCTTCTTCAAGTATTATAAATCAATACA
TTGCTTGTCAAGGGCCATTACCACACACTTGTAAAGATTTTTGGCAAATGACTTGGGAACAAGGCTCCTC
CATGGTTGTGATGTTGACCACACAAGTTGAACGTGGCAGAGTTAAATGTCACCAGTATTGGCCAGAACCC
TCAGAAAGCTCATCCTATGGATGCTATCAAGTCACCTGCCACTCTGAAGAAGGAAACCCTGCCTATATCT
TCAGGAAGATGACACTGTTTAACCAAGAGAAAAATGAGAGCCGTCAACTTACTCAGATTCAGTACACAGC
CTGGCCTGACCATGGAGTACCTGATGATTCGAGTGACTTTCTGGATTTTGTTTGTCATGTACGAGACCAG
AGGGCTGGAAAAGAAGAGCCCATTATTGTTCATTGCAGTGCTGGAATTGGAAGGACTGGGGTTCTTATTA
CTATGGAAACTGCCATGTGTCTCATTGAATGCAATCAGCCAGTTTATCCACTAGACATTGTAAGAACAAT
GAGAGATCAAAGAGCAATGATGATCCAAACACCTAGTCAATACAGATTTGTATGTGAAGCTATTCTGAAA
GTTTATGAAGAAGGATTTGTTAAACCATTAACAACATCATCAAATAAATAA

Translation (926 aa):
MTARFRLPAGRTYNVRASELARDRQHTEVVCNILLLDNTVQAFRVNKHDQGQVLLDIVFKHLDLTERDYF
GLQLADDSTDNPRWLDPNKPIRKQLKRGSPYNLNFRVKFFVSDPNKLQEEYTRYQYFLQIKQDILTGRLS
CPCNTAALLASFAVQSELGDYNQSENLAGYLSDYSFIPNQPQDFEKEIAKLHQQHVGLSPAEAEFNYLNA
ARTLELYGVEFHYARDQSNNEILIGVMSGGILIYKNRVRMNTFLWLKIVKISFKCKQFFIQLRKELHESR
ETLLGFNMVNYRACKTLWKACVEHHTFFRLDRPLPPQKNFFAHYFTLGSKFRYCGRTEVQSVQYGKEKAN
KDRVFARSPSKPLARKLMDWEVVSRNSLSDDRLETQSLPSRSPPGTPNHRNSSFTQEATRVRPSSVGHLV
DHVVHMSPSEDFVSQRSPSSTQANSIVLESSPSQETPEDGQPPALPPKQSKKNSWNQIHFSNSQQDLVTH
TNESFDVPSSPEKSTPNGGIPHDNLVLIKMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRL
NEGDQVVLINGRDIAEHTHDQVVLFIKASCEKHSGELVLLVRPNAVYDVVEEKLESEPDFQYIPEKAPLD
SVHQDDHSLRESMIQLAEGLITGTVLAQFDQLYRKKPGMTMSCAKLPQNISKNRYRDISPYDATRVLLKG
NEDYINANYINMEIPSSSIINQYIACQGPLPHTCKDFWQMTWEQGSSMVVMLTTQVERGRVKCHQYWPEP
SESSSYGCYQVTCHSEEGNPAYIFRKMTLFNQEKNESRQLTQIQYTAWPDHGVPDDSSDFLDFVCHVRDQ
RAGKEEPIIVHCSAGIGRTGVLITMETAMCLIECNQPVYPLDIVRTMRDQRAMMIQTPSQYRFVCEAILK
VYEEGFVKPLTTSSNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH