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Report for CCDS15046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15046.1 Reviewed, update pending Mus musculus 1 Catip 23 108 98 CCDS HistoryNCBI Gene:241112Re-query CCDS DB by CCDS ID:15046.1Re-query CCDS DB by GeneID:241112See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15046.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097697.7 ENSMUSP00000095303.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097697.7Link to Ensembl Protein Viewer:ENSMUSP00000095303.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000097697Re-query CCDS DB by Protein ID:ENSMUSP00000095303
Original member NCBI NM_001033345.2 NP_001028517.1 Removed alive Link to Nucleotide Sequence:NM_001033345.2Link to Protein Sequence:NP_001028517.1Re-query CCDS DB by Nucleotide ID:NM_001033345Re-query CCDS DB by Protein ID:NP_001028517Link to BLAST:NP_001028517.1
Current member NCBI NM_001379457.1 NP_001366386.1 Pending alive Link to Nucleotide Sequence:NM_001379457.1Link to Protein Sequence:NP_001366386.1Re-query CCDS DB by Nucleotide ID:NM_001379457Re-query CCDS DB by Protein ID:NP_001366386Link to BLAST:NP_001366386.1

Chromosomal Locations for CCDS 15046.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74362635 74362659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74362750 74362947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74363252 74363307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74364317 74364403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74364549 74364716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74366617 74366741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74367787 74367863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74368134 74368222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74368393 74369073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGACAAGGAGGAGTGACGGGGCTGGGCTGGAGGATATGCTCCTGTTCTTCCCGGAGACTCTGGCCATCC
TCTCAGACACAGGGGAACCTCAGGGAGAACTGACCATTGAGGTGCAGAGGGGGAAGTACAAGGACGACAT
AGGGATCCTGACCCACTGTCTACTGGTCCACGCCTCTAGCCGCGGCTTCCTAGACAAATCGCTGTGTGGG
AGCTCCCTCCTAGGCTACCTAAACAACAATCTGGAGCTGATGGAACAGCACAGTCAGGAGTTCATCAAGT
TCCCTGTCCTTCCCATGGAGAGGAAGATGAGCGTCCTGAAGCAGGATGGCCAGTTTGTTGTGACCAGAAG
TGTCAAGGAGGGTGAGGAAACGAAGACCGGAGTCTCTGTTTTCCCCTATAAAACATTCAAGGGCTTTGTC
TCCAGTGCAGCCAATGTGGTGCTGCTGAGAGTGATGGCCTGGCAGCAGTCGGTGCCCAGTGGGGCTCGCT
TCCTAGCCTTAGACTCGGAGGGCAAGCTCTGCCATTGCACCTACAAATCCCTGGGTTTCCAGACAATCCA
AGTGGGCAACCAGCAGGCTAAAATGTTCATCGTGGAGCAAACCATACACTCTGAAGAGGGCATCCCCTTC
TCCTGCCAGTACTACTTGCTCCCTGATGGGCACCTGGCTAAGAGAGTCCAGGTGGGCTCTCCAGGATGTT
GTATCATCACCAAGATGCCCCTCATAAGAGAGGAGGATGTGATCGAGTCTCCGCCCACGTTTGATAAGAA
GCCCCTGGTGTGGGGGGAAGACTTGGAGCTTTACTCGAAATTCCTGGACCGGAAGGAGCAGCTGCGCCTC
AGCCACGCGAGTTATCTGCGGCATCACCCCGAGGCCCAAGCCCTAGTCTCCGACTTCCTGCTGTTCCTGC
TGCTCCGCCGGCCAGAGGACGTGGTCACTTTCGCTGCCGAGCACTTCAGGCCCTTTGCAGCGCTGCGCTC
GCCTATCCCAGCCCTGCGATCCTCACACCAGCCCAGCCCTTTCCGCACTCTGGAGAATGAGGAAGAAGAG
GAGGCGAAGGAGGAGGAGGAGAAAGAGGAAGAGGAGGAAGAGGAGGAGGAAATAGCGGGGGAGATAGAGG
GGGAGGAAGAAGAAGAGGAGATAGAAGAGGGTGATGACTACTTGTACATGGACGAGGATGAAGACATCGA
GGACTACACCTACTATGAGAATTACTATTACAACTACGATGAAGAAGTTGACAGTTACGATGATGTCAAC
AACTACGATGATGACGACATTGCCAATGTTGACGACAATGACGATATTGACAATTACGATGATGACAACG
ACGATGACGATGATGACGACGACAACGATGACGAAGATGATGTTGACGACAATGATGACGATGATGTCGA
CAAAGTCCGAGCCAAAGTCGACAACCTCAGTGTCGACAATGATGACAACGATGTTGTCAACAGTGACAAC
GTTGATGTCGACAATGACAACAACAACCAGGGTTAG

Translation (501 aa):
MTRRSDGAGLEDMLLFFPETLAILSDTGEPQGELTIEVQRGKYKDDIGILTHCLLVHASSRGFLDKSLCG
SSLLGYLNNNLELMEQHSQEFIKFPVLPMERKMSVLKQDGQFVVTRSVKEGEETKTGVSVFPYKTFKGFV
SSAANVVLLRVMAWQQSVPSGARFLALDSEGKLCHCTYKSLGFQTIQVGNQQAKMFIVEQTIHSEEGIPF
SCQYYLLPDGHLAKRVQVGSPGCCIITKMPLIREEDVIESPPTFDKKPLVWGEDLELYSKFLDRKEQLRL
SHASYLRHHPEAQALVSDFLLFLLLRRPEDVVTFAAEHFRPFAALRSPIPALRSSHQPSPFRTLENEEEE
EAKEEEEKEEEEEEEEEIAGEIEGEEEEEEIEEGDDYLYMDEDEDIEDYTYYENYYYNYDEEVDSYDDVN
NYDDDDIANVDDNDDIDNYDDDNDDDDDDDDNDDEDDVDDNDDDDVDKVRAKVDNLSVDNDDNDVVNSDN
VDVDNDNNNQG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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