NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS14819.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14819.1 Public Mus musculus 1 Cpa6 23 108 98 CCDS HistoryNCBI Gene:329093Re-query CCDS DB by CCDS ID:14819.1Re-query CCDS DB by GeneID:329093See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14819.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035577.6 ENSMUSP00000035435.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035577.6Link to Ensembl Protein Viewer:ENSMUSP00000035435.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000035577Re-query CCDS DB by Protein ID:ENSMUSP00000035435
Original member NCBI NM_177834.4 NP_808502.2 Updated not alive Link to Nucleotide Sequence:NM_177834.4Link to Protein Sequence:NP_808502.2Re-query CCDS DB by Nucleotide ID:NM_177834Re-query CCDS DB by Protein ID:NP_808502
Current member NCBI NM_177834.5 NP_808502.2 Accepted alive Link to Nucleotide Sequence:NM_177834.5Link to Protein Sequence:NP_808502.2Re-query CCDS DB by Nucleotide ID:NM_177834Re-query CCDS DB by Protein ID:NP_808502Link to BLAST:NP_808502.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808502.2 438 Q5U901-1 438 100% 0 0

Chromosomal Locations for CCDS 14819.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 10325124 10325311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10329473 10329557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10337267 10337469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10408269 10408359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10409257 10409367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10477025 10477129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10481014 10481115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10483949 10484063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10488825 10488949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10595620 10595695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10719612 10719727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGAACTTCCTCGGGAATCCCAGGAGCCACACAGCAGCTTTTCTGCCGGTTTGCTGGCTCCTTTTGAATA
TTCTGAAACCTGGGCACTGCCACTCTTACGACAACCGCTATGCTGGTGATAAAGTGATAAGACTCATCCC
CAAATCCGAAGAGGAAGCACTTGCACTCAAGAACATATACCACCAACTTAAGGTGGACCTGTGGCAGCCC
AGCAGTATCTCCTATGTGTCAGAGGGGACAATTACTGATGTCCATATTTCCCAAAATGCTTCCAGAACCC
TGTTAGCGTTCTTACAGGAAACCCACATCTACTACAAGGTCCTCATAGAAGATCTTCAGAAAGCTGTGGA
AAATGAAAACAGCTTGCAAACCCAGAGAAACAGAAGATCCCTGTCTGAATACAACTACGAGGTGTATCAC
TCCTTAGAAGATATTCAGAGTTGGTTGCACCATCTGAACCAAACTCAGCCAGGCCTCGTTCGAGTGTTCT
CTATTGGAAGATCATACGAAGGAAGACCTCTCTTTATTATGCAGCTGGGCAGAAAATCACGAGCCTACAA
AAGAGCTGTCTGGATAGACTGCGGCATTCACGCAAGAGAATGGATCGGTCCTGCCTTTTGTCAGTGGTTT
GTAAGAGAAGCCATTCTGACCTACAAGACTGACCCAGCCATGAAAAAAATGTTGAATCATCTGTATTTCT
ATATCATGCCTGTATTCAATGTCGATGGATACCATTTCAGCTGGACACATGATAGATTCTGGAGAAAGAC
CCGGTCAAGAGACTCTAAGTTTCGCTGTCGTGGAGTTGATGCCAATCGCAACTGGAAAGTGAAATGGTGC
GATGAAGGAGCCTCCGCACACCCTTGTGATGATACATACTGTGGTCCTTTCCCAGAATCTGAACCAGAAG
TGAAGGCTGTAGCTAACTTCCTTCGAAAACACAGAAAGCGCATCAGGGCGTACCTGTCTTTTCATGCCTA
TGCTCAGATGTTGCTATATCCTTATTCTTACAAATATGCAACAATCCCCAATTTTAGCTGTGTGGAATTT
GCAGCTCACAAAGCTGTGAAGGCACTTCGGTCGGTACATGGGATCCGATACAGACATGGCCCCGCCTCCC
AAACACTGTATGTAAGCTCTGGTAACTCAATGGATTGGGCTTATAAAAATGGAATACCCTATGCATTTGC
TTTTGAACTGCGAGACACTGGGCATTTTGGATTTCTACTGCCAGAGATGCTCATTAAACCCACCTGCACA
GAGACCATGCTGGCTGTGAAGAATATCACAATGCACCTGCTAAAGAAATGTCCTTGA

Translation (438 aa):
MNFLGNPRSHTAAFLPVCWLLLNILKPGHCHSYDNRYAGDKVIRLIPKSEEEALALKNIYHQLKVDLWQP
SSISYVSEGTITDVHISQNASRTLLAFLQETHIYYKVLIEDLQKAVENENSLQTQRNRRSLSEYNYEVYH
SLEDIQSWLHHLNQTQPGLVRVFSIGRSYEGRPLFIMQLGRKSRAYKRAVWIDCGIHAREWIGPAFCQWF
VREAILTYKTDPAMKKMLNHLYFYIMPVFNVDGYHFSWTHDRFWRKTRSRDSKFRCRGVDANRNWKVKWC
DEGASAHPCDDTYCGPFPESEPEVKAVANFLRKHRKRIRAYLSFHAYAQMLLYPYSYKYATIPNFSCVEF
AAHKAVKALRSVHGIRYRHGPASQTLYVSSGNSMDWAYKNGIPYAFAFELRDTGHFGFLLPEMLIKPTCT
ETMLAVKNITMHLLKKCP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH