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Report for CCDS1439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1439.1 Public Homo sapiens 1 OPTC 24 110 108 CCDS HistoryNCBI Gene:26254Re-query CCDS DB by CCDS ID:1439.1Re-query CCDS DB by GeneID:26254See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1439.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367222.7 ENSP00000356191.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367222.7Link to Ensembl Protein Viewer:ENSP00000356191.2Re-query CCDS DB by Nucleotide ID:ENST00000367222Re-query CCDS DB by Protein ID:ENSP00000356191
Original member Current member NCBI NM_014359.4 NP_055174.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014359.4Link to Protein Sequence:NP_055174.1Re-query CCDS DB by Nucleotide ID:NM_014359Re-query CCDS DB by Protein ID:NP_055174Link to BLAST:NP_055174.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055174.1 332 Q9UBM4 332 100% 0 0

Chromosomal Locations for CCDS 1439.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 203496006 203496236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 203496977 203497115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 203498681 203498839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 203499649 203499851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 203502914 203503009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 203503550 203503720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGAGGCTCCTGGCTTTCCTGAGTCTGCTGGCCTTGGTGCTGCAGGAGACAGGGACAGCTTCTCTCCCAA
GGAAGGAGAGGAAGAGGAGAGAGGAGCAGATGCCCAGGGAAGGCGATTCCTTTGAAGTTCTGCCTCTGCG
GAATGATGTCCTGAACCCAGACAACTATGGTGAAGTCATTGACCTGAGCAACTATGAGGAGCTCACAGAT
TATGGGGACCAACTCCCCGAGGTTAAGGTGACTAGCCTCGCTCCTGCAACCAGCATCAGTCCCGCCAAGA
GCACTACGGCTCCAGGGACACCCTCGTCAAACCCCACGATGACCAGACCTACTACAGCAGGGCTGCTACT
GAGTTCCCAGCCCAACCATGGTCTGCCCACCTGCCTGGTCTGCGTGTGCCTCGGTTCCTCTGTGTATTGC
GATGACATTGACCTAGAGGACATTCCTCCTCTTCCTCGGAGGACTGCCTACCTGTATGCACGCTTCAACC
GCATCAGCCGTATCAGGGCCGAAGACTTCAAAGGGCTGACAAAGTTGAAGAGGATTGACCTCTCCAACAA
CCTCATTTCCTCCATCGATAATGATGCCTTCCGCCTGCTACATGCCCTCCAGGACCTCATCCTCCCAGAG
AACCAGTTGGAAGCTCTGCCCGTGCTGCCCAGTGGCATTGAGTTCCTGGATGTCCGCCTAAATCGGCTCC
AGAGCTCGGGGATACAGCCTGCAGCCTTCAGGGCAATGGAGAAGCTGCAGTTCCTTTACCTGTCAGACAA
CCTGCTGGATTCTATCCCGGGGCCTTTGCCCCTGAGCCTGCGCTCTGTACACCTGCAGAATAACCTGATA
GAGACCATGCAGAGAGACGTCTTCTGTGACCCCGAGGAGCACAAACACACCCGCAGGCAGCTGGAAGACA
TCCGCCTGGATGGCAACCCCATCAACCTCAGCCTCTTCCCCAGCGCCTACTTCTGCCTGCCTCGGCTCCC
CATCGGCCGCTTCACGTAG

Translation (332 aa):
MRLLAFLSLLALVLQETGTASLPRKERKRREEQMPREGDSFEVLPLRNDVLNPDNYGEVIDLSNYEELTD
YGDQLPEVKVTSLAPATSISPAKSTTAPGTPSSNPTMTRPTTAGLLLSSQPNHGLPTCLVCVCLGSSVYC
DDIDLEDIPPLPRRTAYLYARFNRISRIRAEDFKGLTKLKRIDLSNNLISSIDNDAFRLLHALQDLILPE
NQLEALPVLPSGIEFLDVRLNRLQSSGIQPAAFRAMEKLQFLYLSDNLLDSIPGPLPLSLRSVHLQNNLI
ETMQRDVFCDPEEHKHTRRQLEDIRLDGNPINLSLFPSAYFCLPRLPIGRFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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