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Report for CCDS14142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14142.1 Public Homo sapiens X ARHGAP6 24 110 108 CCDS HistoryNCBI Gene:395Re-query CCDS DB by CCDS ID:14142.1Re-query CCDS DB by GeneID:395See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14142.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380718.1 ENSP00000370094.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380718.1Link to Ensembl Protein Viewer:ENSP00000370094.1Re-query CCDS DB by Nucleotide ID:ENST00000380718Re-query CCDS DB by Protein ID:ENSP00000370094
Original member Current member NCBI NM_006125.3 NP_006116.2 Accepted alive Link to Nucleotide Sequence:NM_006125.3Link to Protein Sequence:NP_006116.2Re-query CCDS DB by Nucleotide ID:NM_006125Re-query CCDS DB by Protein ID:NP_006116Link to BLAST:NP_006116.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006116.2 765 O43182-2 765 100% 0 0

Chromosomal Locations for CCDS 14142.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 11143858 11144248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11156529 11156626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11169505 11169684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11178100 11178248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11179302 11179452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11182063 11182118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11186236 11186431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11188728 11188984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11196925 11196996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11254548 11254707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11664241 11664828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2298 nt):
ATGTCCGCGCAGAGCCTGCTCCACAGCGTCTTCTCCTGTTCCTCGCCCGCTTCAAGTAGCGCGGCCTCGG
CC
AAGGGCTTCTCCAAGAGGAAGCTGCGCCAGACCCGCAGCCTGGACCCGGCCCTGATCGGCGGCTGCGG
G
AGCGACGAGGCGGGCGCGGAGGGCAGTGCGCGGGGAGCCACGGCGGGCCGCCTCTACTCCCCATCACTC
CCA
GCCGAGAGTCTCGGCCCTCGCTTGGCGTCCTCTTCCCGGGGTCCGCCCCCCAGGGCCACCAGGCTAC
CG
CCTCCTGGACCTCTTTGCTCGTCCTTCTCCACACCCAGCACCCCGCAGGAGAAGTCACCATCCGGCAG
C
TTTCACTTTGACTATGAGGTTCCCCTGGGTCGCGGCGGCCTCAAGAAGAGCATGGCCTGGGACCTGCCT
TCT
GTCCTGGCCGGGCCAGCCAGTAGCCGAAGCGCTTCCAGCATCCTCTGTTCATCCGGGGGAGGCCCCA
AT
GGCATCTTCGCTTCTCCTAGGAGGTGGCTCCAGCAGAGGAAGTTCCAGTCCCCACCCGACAGTCGCGG
G
CACCCCTACGTCGTGTGGAAATCCGAGGGTGATTTCACCTGGAACAGCATGTCAGGCCGCAGTGTACGG
CTG
AGGTCAGTCCCCATCCAGAGTCTCTCAGAGCTGGAGAGGGCCCGGCTGCAGGAAGTGGCTTTTTATC
AG
TTGCAACAGGACTGTGACCTGAGCTGTCAGATCACCATTCCCAAAGATGGACAAAAGAGAAAGAAATC
T
TTAAGAAAGAAACTGGATTCACTAGGAAAGGAGAAAAACAAAGACAAAGAATTCATCCCACAGGCATTT
GGA
ATGCCCTTATCCCAAGTCATTGCGAATGACAGGGCCTATAAACTCAAGCAGGACTTGCAGAGGGACG
AG
CAGAAAGATGCATCTGACTTTGTGGCTTCCCTCCTCCCATTTGGAAATAAAAGACAAAACAAAGAACT
C
TCAAGCAGTAACTCATCTCTCAGCTCAACCTCAGAAACACCGAATGAGTCAACGTCCCCAAACACCCCG
GAA
CCGGCTCCTCGGGCTAGGAGGAGGGGTGCCATGTCAGTGGATTCTATCACCGATCTTGATGACAATC
AG
TCTCGACTACTAGAAGCTTTACAACTTTCCTTGCCTGCTGAGGCTCAAAGTAAAAAGGAAAAAGCCAG
A
GATAAGAAACTCAGTCTGAATCCTATTTACAGACAGGTCCCTAGGCTGGTGGACAGCTGCTGTCAGCAC
CTA
GAAAAACATGGCCTCCAGACAGTGGGGATATTCCGAGTTGGAAGCTCAAAAAAGAGAGTGAGACAAT
TA
CGTGAGGAATTTGACCGTGGGATTGATGTCTCTCTGGAGGAGGAGCACAGTGTTCATGATGTGGCAGC
C
TTGCTGAAAGAGTTCCTGAGGGACATGCCAGACCCCCTTCTCACCAGGGAGCTGTACACAGCTTTCATC
AAC
ACTCTCTTGTTGGAGCCGGAGGAACAGCTGGGCACCTTGCAGCTCCTCATATACCTTCTACCTCCCT
GC
AACTGCGACACCCTCCACCGCCTGCTACAGTTCCTCTCCATCGTGGCCAGGCATGCCGATGACAACAT
C
AGCAAAGATGGGCAAGAGGTCACTGGGAATAAAATGACATCTCTAAACTTAGCCACCATATTTGGACCC
AAC
CTGCTGCACAAGCAGAAGTCATCAGACAAAGAATTCTCAGTTCAGAGTTCAGCCCGGGCTGAGGAGA
GC
ACGGCCATCATCGCTGTTGTGCAAAAGATGATTGAAAATTATGAAGCCCTGTTCATGGTTCCCCCAGA
T
CTCCAGAACGAAGTGCTGATCAGCCTGTTAGAGACCGATCCTGATGTCGTGGACTATTTACTCAGAAGA
AAG
GCTTCCCAATCATCAAGCCCTGACATGCTGCAGTCGGAAGTTTCCTTTTCCGTGGGAGGGAGGCATT
CA
TCTACAGACTCCAACAAGGCCTCCAGCGGAGACATCTCCCCTTATGACAACAACTCCCCAGTGCTGTC
T
GAGCGCTCCCTGCTGGCTATGCAAGAGGACGCGGCCCCGGGGGGCTCGGAGAAGCTTTACAGAGTGCCA
GGG
CAGTTTATGCTGGTGGGCCACTTGTCGTCGTCAAAGTCAAGGGAAAGTTCTCCTGGACCAAGGCTTG
GG
AAAGGTAACTGGAGCCTGGCCAGCAGGCGCTGGCCAAAACAAGCGACCCTCCTCTTGTTGCATGTGGC
A
TGGTGTGGGGCTCTTCGGACCTTCTCTTCGTCTCTCCCTTATTTGATGTTTCTGTAA


Translation (765 aa):
MSAQSLLHSVFSCSSPASSSAASAKGFSKRKLRQTRSLDPALIGGCGSDEAGAEGSARGATAGRLYSPSL
P
AESLGPRLASSSRGPPPRATRLPPPGPLCSSFSTPSTPQEKSPSGSFHFDYEVPLGRGGLKKSMAWDLP
S
VLAGPASSRSASSILCSSGGGPNGIFASPRRWLQQRKFQSPPDSRGHPYVVWKSE
GDFTWNSMSGRSVR
L
RSVPIQSLSELERARLQEVAFYQLQQDCDLSCQITIPK
DGQKRKKSLRKKLDSLGKEKNKDKEFIPQAF
G
MPLSQVIANDRAYKLKQDLQRDEQKDASDFVASLLPFGNKRQNKELSSSNSSLSSTSETPNESTSPNTP
E
PAPRARRR
GAMSVDSITDLDDNQSRLLEALQLSLPAEAQSKKEKARDKKLSLNPIYRQVPRLVDSCCQH
L
EKH
GLQTVGIFRVGSSKKRVRQLREEFDRGIDVSLEEEHSVHDVAALLKEFLRDMPDPLLTRELYTAFI
N
TL
LLEPEEQLGTLQLLIYLLPPCNCDTLHRLLQFLSIVARHADDNISKDGQEVTGNKMTSLNLATIFGP
N
LLHKQKSSDKEFSVQSSARAEESTAIIAVVQKMIENYEALFM
VPPDLQNEVLISLLETDPDVVDYLLRR
K
ASQS
SSPDMLQSEVSFSVGGRHSSTDSNKASSGDISPYDNNSPVLSERSLLAMQEDAAPGGSEKLYRVP
G
QFMLVGHLSSSKSRESSPGPRLGKGNWSLASRRWPKQATLLLLHVAWCGALRTFSSSLPYLMFL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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