NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1388.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1388.1 Public Homo sapiens 1 F13B 24 110 108 CCDS HistoryNCBI Gene:2165Re-query CCDS DB by CCDS ID:1388.1Re-query CCDS DB by GeneID:2165See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1388.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367412.2 ENSP00000356382.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367412.2Link to Ensembl Protein Viewer:ENSP00000356382.2Re-query CCDS DB by Nucleotide ID:ENST00000367412Re-query CCDS DB by Protein ID:ENSP00000356382
Original member Current member NCBI NM_001994.3 NP_001985.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001994.3Link to Protein Sequence:NP_001985.2Re-query CCDS DB by Nucleotide ID:NM_001994Re-query CCDS DB by Protein ID:NP_001985Link to BLAST:NP_001985.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001985.2 661 P05160 661 100% 0 0

Chromosomal Locations for CCDS 1388.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 197039378 197039411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197040522 197040735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197050697 197050879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197052634 197052834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197055715 197055897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197057013 197057198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197057286 197057465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197060366 197060542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197060899 197061075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197061784 197061969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197062857 197063057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197067160 197067223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1986 nt):
ATGAGGTTGAAAAACCTGACTTTTATCATCATATTGATAATCTCAGGAGAACTCTATGCAGAAGAGAAAC
CCTGTGGTTTTCCTCATGTGGAAAATGGAAGAATTGCCCAATATTACTATACTTTTAAAAGCTTTTACTT
TCCAATGAGCATAGACAAAAAATTGTCATTTTTCTGCTTGGCTGGTTATACCACTGAAAGTGGAAGACAA
GAAGAGCAAACCACGTGTACAACAGAAGGCTGGTCTCCAGAGCCAAGGTGCTTCAAAAAATGCACTAAGC
CTGACCTGAGTAATGGTTACATCTCTGATGTAAAGTTATTGTATAAAATTCAAGAGAACATGCGTTATGG
TTGCGCTTCAGGGTACAAAACCACTGGAGGGAAGGATGAAGAAGTGGTTCAATGTCTCTCTGATGGATGG
TCTTCTCAACCAACCTGTAGGAAAGAACATGAAACATGTTTGGCTCCTGAATTATATAATGGAAATTATT
CCACAACACAGAAAACATTCAAAGTGAAGGACAAAGTACAATACGAATGTGCTACTGGCTACTACACAGC
TGGAGGAAAGAAGACAGAGGAGGTAGAATGTCTCACATACGGATGGTCTCTCACACCAAAATGTACCAAA
TTAAAGTGCTCTTCTTTAAGATTAATTGAAAATGGTTATTTTCATCCTGTAAAGCAAACCTATGAAGAAG
GAGATGTCGTTCAGTTTTTCTGTCATGAAAATTATTATCTAAGTGGATCTGATTTAATTCAATGCTATAA
CTTTGGTTGGTACCCAGAATCTCCTGTATGCGAAGGAAGAAGAAACAGATGTCCTCCTCCACCTCTGCCC
ATAAACTCCAAAATTCAAACACATTCAACAACTTATCGTCATGGAGAAATAGTTCATATAGAATGTGAAC
TTAATTTTGAGATCCATGGGTCAGCAGAAATACGTTGTGAAGATGGAAAATGGACAGAACCTCCAAAATG
CATTGAAGGACAGGAGAAGGTAGCCTGTGAGGAACCACCCTTCATTGAAAATGGTGCAGCAAATTTACAC
TCTAAGATTTATTACAATGGGGATAAAGTGACATATGCATGTAAAAGCGGCTACCTTCTCCATGGATCGA
ATGAGATAACTTGTAATCGTGGAAAATGGACACTTCCTCCTGAGTGTGTTGAAAATAATGAGAATTGTAA
GCATCCTCCTGTTGTAATGAATGGGGCTGTTGCAGACGGGATATTGGCAAGCTATGCAACAGGATCCTCA
GTGGAATATAGATGCAATGAATATTACTTACTGAGGGGATCAAAAATATCTCGTTGCGAACAAGGAAAAT
GGTCATCCCCACCTGTTTGCTTGGAACCATGTACTGTTAATGTGGATTACATGAACAGAAATAACATAGA
AATGAAGTGGAAATATGAAGGGAAAGTCTTACATGGAGATTTAATAGATTTTGTATGTAAACAGGGATAT
GACTTATCTCCATTAACCCCATTGTCTGAATTATCTGTGCAGTGCAACAGAGGAGAAGTGAAATATCCTT
TATGTACTAGAAAAGAATCTAAAGGAATGTGCACATCTCCTCCTCTTATTAAACATGGAGTCATTATTAG
TTCAACAGTAGACACCTATGAAAATGGCTCTTCAGTAGAATACAGATGTTTTGATCACCATTTCCTAGAA
GGATCTAGGGAGGCCTATTGTTTAGATGGAATGTGGACTACACCACCATTGTGTTTAGAGCCATGCACAT
TATCTTTTACTGAAATGGAAAAGAATAATTTACTTCTGAAATGGGATTTTGACAATAGACCACACATTTT
GCATGGTGAATATATTGAGTTTATTTGTAGAGGAGATACTTATCCAGCTGAATTATATATTACTGGATCT
ATACTTAGAATGCAATGTGACAGAGGGCAGTTAAAATATCCAAGATGTATTCCAAGACAAAGCACTCTGT
CTTATCAAGAACCCTTAAGAACATAG

Translation (661 aa):
MRLKNLTFIIILIISGELYAEEKPCGFPHVENGRIAQYYYTFKSFYFPMSIDKKLSFFCLAGYTTESGRQ
EEQTTCTTEGWSPEPRCFKKCTKPDLSNGYISDVKLLYKIQENMRYGCASGYKTTGGKDEEVVQCLSDGW
SSQPTCRKEHETCLAPELYNGNYSTTQKTFKVKDKVQYECATGYYTAGGKKTEEVECLTYGWSLTPKCTK
LKCSSLRLIENGYFHPVKQTYEEGDVVQFFCHENYYLSGSDLIQCYNFGWYPESPVCEGRRNRCPPPPLP
INSKIQTHSTTYRHGEIVHIECELNFEIHGSAEIRCEDGKWTEPPKCIEGQEKVACEEPPFIENGAANLH
SKIYYNGDKVTYACKSGYLLHGSNEITCNRGKWTLPPECVENNENCKHPPVVMNGAVADGILASYATGSS
VEYRCNEYYLLRGSKISRCEQGKWSSPPVCLEPCTVNVDYMNRNNIEMKWKYEGKVLHGDLIDFVCKQGY
DLSPLTPLSELSVQCNRGEVKYPLCTRKESKGMCTSPPLIKHGVIISSTVDTYENGSSVEYRCFDHHFLE
GSREAYCLDGMWTTPPLCLEPCTLSFTEMEKNNLLLKWDFDNRPHILHGEYIEFICRGDTYPAELYITGS
ILRMQCDRGQLKYPRCIPRQSTLSYQEPLRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH