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Report for CCDS13188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13188.1 Public Homo sapiens 20 BCL2L1 24 110 108 CCDS HistoryNCBI Gene:598Re-query CCDS DB by CCDS ID:13188.1Re-query CCDS DB by GeneID:598See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13188.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376055.9 ENSP00000365223.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376055.9Link to Ensembl Protein Viewer:ENSP00000365223.4Re-query CCDS DB by Nucleotide ID:ENST00000376055Re-query CCDS DB by Protein ID:ENSP00000365223
Original member Current member EBI ENST00000422920.2 ENSP00000411252.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000422920.2Link to Ensembl Protein Viewer:ENSP00000411252.2Re-query CCDS DB by Nucleotide ID:ENST00000422920Re-query CCDS DB by Protein ID:ENSP00000411252
Original member Current member NCBI NM_001191.4 NP_001182.1 Accepted alive Link to Nucleotide Sequence:NM_001191.4Link to Protein Sequence:NP_001182.1Re-query CCDS DB by Nucleotide ID:NM_001191Re-query CCDS DB by Protein ID:NP_001182Link to BLAST:NP_001182.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182.1 170 Q07817-2 170 100% 0 0

Chromosomal Locations for CCDS 13188.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 31665949 31666086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31721844 31722218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGTCTCAGAGCAACCGGGAGCTGGTGGTTGACTTTCTCTCCTACAAGCTTTCCCAGAAAGGATACAGCT
GGAGTCAGTTTAGTGATGTGGAAGAGAACAGGACTGAGGCCCCAGAAGGGACTGAATCGGAGATGGAGAC
CCCCAGTGCCATCAATGGCAACCCATCCTGGCACCTGGCAGACAGCCCCGCGGTGAATGGAGCCACTGGC
CACAGCAGCAGTTTGGATGCCCGGGAGGTGATCCCCATGGCAGCAGTAAAGCAAGCGCTGAGGGAGGCAG
GCGACGAGTTTGAACTGCGGTACCGGCGGGCATTCAGTGACCTGACATCCCAGCTCCACATCACCCCAGG
GACAGCATATCAGAGCTTTGAACAGGATACTTTTGTGGAACTCTATGGGAACAATGCAGCAGCCGAGAGC
CGAAAGGGCCAGGAACGCTTCAACCGCTGGTTCCTGACGGGCATGACTGTGGCCGGCGTGGTTCTGCTGG
GCTCACTCTTCAGTCGGAAATGA

Translation (170 aa):
MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLADSPAVNGATG
HSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQDTFVELYGNNAAAES
RKGQERFNRWFLTGMTVAGVVLLGSLFSRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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