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Report for CCDS1308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1308.1 Public Homo sapiens 1 SLC9C2 24 110 108 CCDS HistoryNCBI Gene:284525Re-query CCDS DB by CCDS ID:1308.1Re-query CCDS DB by GeneID:284525See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1308.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367714.4 ENSP00000356687.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367714.4Link to Ensembl Protein Viewer:ENSP00000356687.3Re-query CCDS DB by Nucleotide ID:ENST00000367714Re-query CCDS DB by Protein ID:ENSP00000356687
Original member Current member NCBI NM_178527.4 NP_848622.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178527.4Link to Protein Sequence:NP_848622.2Re-query CCDS DB by Nucleotide ID:NM_178527Re-query CCDS DB by Protein ID:NP_848622Link to BLAST:NP_848622.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848622.2 1124 Q5TAH2 1124 100% 0 0

Chromosomal Locations for CCDS 1308.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 173501094 173501097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173503266 173503326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173505247 173505331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173506856 173507041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173509568 173509699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173517537 173517704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173521301 173521399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173523969 173524094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173524779 173524927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173526663 173526714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173529905 173530054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173533609 173533797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173534484 173534682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173535830 173535949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173536942 173537039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173547689 173547784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173548389 173548552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173554733 173554814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173557340 173557508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173573182 173573325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173576661 173576760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173581847 173582008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173583506 173583622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173587665 173587830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173597904 173598032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173600117 173600217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173601650 173601776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3375 nt):
ATGAGTTCTTACTTCTGGGCACAAAATGAAAGTAACAGACCTGATTTACTCTGCGGGCAGCCAGCTGACT
ACCTTGTTGAAGAGAAACATTTCACAACGCTTGTATGCTTCATTGTTGTTTTGGGAGGGCTTTTGAAGAT
GTGTTTAAAGAATTGTGAAGTCATTGTTTTGACGATTCTTTCTCTATCAGGATTCGTGATAGGACACATG
GCCTACAATTCTGTTGAGGTGCACCAAATTGTCTACCCTCTTCTAAGAACATCAAGTTTTTCACTTTATT
CTTACTTTTCACCTTTAATTATATTTATGGTTGCTTTGGATGTAGAATTTTATACACTCAAGAAAATGTT
TTGGCAGGTCTTGTTAACTGGATTAATTAGCTTTTCTACAGCAAGCATCATAATTGGATATGTCGTTATA
AAATTCAATAAAGATTCATGGGATTTGCAATCTTGCCTACTCTTTAGCATCACCCTTGGCATTATAGATC
CTCTTCGTTCTGTGAATTCACTAAAAACTATTGGCATTTCTAAAATATACATTGATCTCATTAGAGGAGA
ATCATTGATCATTTGTAGCATCGCATCAATTTTTTTTGGAAATTTTCGGGGCAACAGAATCCACTTTTCT
ATTTTTAGAGATTTACATGTAGGCATTGAACTCAGCTATGACATTTTGGGAAGCATAATATTTGGATATT
GGTGTGCAAAAATCATTCAGTGTATATTGGCTGACGTTTTTAGCAATATGCTGACTAATATCATTCTCTG
CTTTTCAATGGTGTACATGACTTTCTATATTGTGGAATTTTTAGGAATGTCAGGCACTCTTGCCTTAGCC
GCTGTAGGACTGAATTTAGATTCTTTAACTTTTAAACCGAAGATCGAACTTGTAATTACTAAGTTCTTAA
GAATTTTTTCATCTGTATATGAACATTTAATATATGCTTTCTTTGGCATTGTGATTGGATGTGGAGAACT
CAGCCACTATGAATTTCACACTATACCTTTCATATTCATTTTATTTACAACAGTGAATTTGGTAAGGTTG
CTTACTATTTTGTTAGTGAGCCCTATTTTGATGCATTCAAATTATGAATATAATTGGCGATGGGGAGTTG
TAATCACGTGGTCTGGAATTAAAGGAGTTTTTAATTTACTCTGGGCTCCTGATGTTTATAATCTCGCTGA
ACGAAAAGTGGAAGTACCACAAATGTTTATACTCTATGTACAAGTAATATCATTATTGACAATGGGAATA
AATTCATACGTGATGACTCAGTCAGCCAGGAAGTTAGATTTGTGTGTTCTTTCCCTCCCAAGACAAATGA
TCTTGCAAAATGCCACTCAGCACATACAGGAGATAGTACAGAACACAATAACTTTATTTAAAACAGAAAA
AATTTTGACAAATGTTAACTGGACCTTAGTAGAAGATAAAACGAGGATCGAATACATTCCTTTTTCCCAC
GTTTCACATAATGATATGAAGACAGAATCCACAACAGATGAAGCTTTAATGGAGGAAGCCAGATTGCATG
TAGCTGCAATACAAATGAGTAGCTTTGAAAAACAGCGTAACAATGGAATTCTTGAAATAGAGGCAGCCCG
GATATTAATTGGTGCAGCAAAATGCTATTACTCCATCCAAGGAAAATTCATGAGTATTTATGATGTTTCA
ACTTATATGAGAACTAGAAGTTGGCTTATAAAGTTTAAAAATGTTTTAACTTTCTTGGAATATTGTATAG
AAAAGATACATTTTATTCCACCTGAGAGTAATACATTTCTGACTTTTATATTTCACATAGTATTTTCTGA
AGAATTTGAATATACAGGACAGATTATAAATTTGATATATATTTATCCTATGATAATACATCTGTGGCCA
ATGGCAAGAGGTTTAAATGTATCAGCACTGATATCAATAAACTACTATTTTATGTTTTTATATGTATTAG
AATCAACATTGAAGATAATAATTTTGAAAAGGAAATATTTTCAACAATGTTGGAATACTTTGGAATTTTT
TATCCTGGTTATTGGAATCATTGATATCTTTTGTGTATACTTTGTGAAATTGAGACCAGACAACTTGGCT
CTTATACAGCTTACAGTAATAATGGGATATTTAAGAATAATTAGGTTTCTTCCTCTCTTCAAGATAATAG
TACCAATACTGATAAGAATTGCAGATGTGCAGATCAAAAAGCGCCTCAGCTTGATGTATAGTATTACAAA
AGGCTATATCAAAAGTCAAGAAGATGCCAAACTTCTAATAAAACAAATAGCTGTCTGTGAATCAATATAT
CAGAAACTATGTGAAATTTTGGAAACCAACAAACAGGATGCTGTCAAAGAATTAGTACTCATGGAGCATG
AGGGTCGTGATGTTGTCATTGCTTTGAAGACTAAACAGGCAATCCGGAATGTGATTGCTAAAGCTCTAAA
AAATCTCACCTTCCTTTGTTCAAGAGGCATTATTGATAAGCATGAAGTCATTGAGATAAATAAGGTACTT
CTTAAAAAATTAAAAGCACTAAATAACTTTCCAAAGGCAATCCCACCCCCAACTCCTGACATATACCTTC
ACAACATCATTTGGCTGGAAGGTAAAGATGTTCTCATTGACTTCTTCAAGGAAAGAGCCAAACTTGCCTG
TTTTGACTCTGGAGATACCATTTGTAAAGGAGGTGAAATGCCACAAGGAATCTACTTAATTATTTCAGGA
ATGGCAATTTTGCATAGTTTATCTCCTACCTTTGGAATAGAGAGTAATCAAAGGTGTGATAGAGGGTCCA
GAGACATGTTTACAGAGTTCTGTACTACTGGGGACATAATTGGAGAGCTAAGCTGTCTGCTTAAGCGTGA
AATTGAATATACCGTCATCTGTGAAACTAGTTTACAGGCCTGCTTTATCTCCCTGGAGGATTTATATGAA
GGCTTTGATGCCTTCTGGCCATCTCTGGAATATAAAATATGGCTAAAGCTTGCTCTCAGTACTGCCTATC
AGTATTTTGAATCAAGTCTTATTGATGAGGACTTAAGGTTTCAGAACTGTGTGATGTTCAATCAAGCATA
TGTGGAAACTTTATCAAGCTATAGTGACATGATTATTGATAATATGACCATGAAATTTGTTATCATTGTG
TATGGCAGTGTAATTGATACTAAGACAGAGGAACCATATTTTGCACCTTGCATTATACCTACAACCTGTG
AGCAGGTTCAGGGAACTTCTGATTTAAGCAAGCTGCTGATAATCCAAGCATCTGAGCTTACCCAAAGAAA
TAGTAACACCAATGTCATGGCCTCAGTCAACACGGTCTTTGAACAACCAGGAAAGAATATAAATGGAAGA
CAAAAGATGAGTTGA

Translation (1124 aa):
MSSYFWAQNESNRPDLLCGQPADYLVEEKHFTTLVCFIVVLGGLLKMCLKNCEVIVLTILSLSGFVIGHM
AYNSVEVHQIVYPLLRTSSFSLYSYFSPLIIFMVALDVEFYTLKKMFWQVLLTGLISFSTASIIIGYVVI
KFNKDSWDLQSCLLFSITLGIIDPLRSVNSLKTIGISKIYIDLIRGESLIICSIASIFFGNFRGNRIHFS
IFRDLHVGIELSYDILGSIIFGYWCAKIIQCILADVFSNMLTNIILCFSMVYMTFYIVEFLGMSGTLALA
AVGLNLDSLTFKPKIELVITKFLRIFSSVYEHLIYAFFGIVIGCGELSHYEFHTIPFIFILFTTVNLVRL
LTILLVSPILMHSNYEYNWRWGVVITWSGIKGVFNLLWAPDVYNLAERKVEVPQMFILYVQVISLLTMGI
NSYVMTQSARKLDLCVLSLPRQMILQNATQHIQEIVQNTITLFKTEKILTNVNWTLVEDKTRIEYIPFSH
VSHNDMKTESTTDEALMEEARLHVAAIQMSSFEKQRNNGILEIEAARILIGAAKCYYSIQGKFMSIYDVS
TYMRTRSWLIKFKNVLTFLEYCIEKIHFIPPESNTFLTFIFHIVFSEEFEYTGQIINLIYIYPMIIHLWP
MARGLNVSALISINYYFMFLYVLESTLKIIILKRKYFQQCWNTLEFFILVIGIIDIFCVYFVKLRPDNLA
LIQLTVIMGYLRIIRFLPLFKIIVPILIRIADVQIKKRLSLMYSITKGYIKSQEDAKLLIKQIAVCESIY
QKLCEILETNKQDAVKELVLMEHEGRDVVIALKTKQAIRNVIAKALKNLTFLCSRGIIDKHEVIEINKVL
LKKLKALNNFPKAIPPPTPDIYLHNIIWLEGKDVLIDFFKERAKLACFDSGDTICKGGEMPQGIYLIISG
MAILHSLSPTFGIESNQRCDRGSRDMFTEFCTTGDIIGELSCLLKREIEYTVICETSLQACFISLEDLYE
GFDAFWPSLEYKIWLKLALSTAYQYFESSLIDEDLRFQNCVMFNQAYVETLSSYSDMIIDNMTMKFVIIV
YGSVIDTKTEEPYFAPCIIPTTCEQVQGTSDLSKLLIIQASELTQRNSNTNVMASVNTVFEQPGKNINGR
QKMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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