NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12414.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12414.2 Public Homo sapiens 19 ZNF681 24 110 108 CCDS HistoryNCBI Gene:148213Re-query CCDS DB by CCDS ID:12414.2Re-query CCDS DB by GeneID:148213See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 12414.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000402377.3 ENSP00000384000.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000402377.3Link to Ensembl Protein Viewer:ENSP00000384000.3Re-query CCDS DB by Nucleotide ID:ENST00000402377Re-query CCDS DB by Protein ID:ENSP00000384000
Original member Current member NCBI NM_138286.3 NP_612143.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138286.3Link to Protein Sequence:NP_612143.2Re-query CCDS DB by Nucleotide ID:NM_138286Re-query CCDS DB by Protein ID:NP_612143Link to BLAST:NP_612143.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612143.2 645 Q96N22-1 645 100% 0 0

Chromosomal Locations for CCDS 12414.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 23743612 23745323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23754823 23754918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23755425 23755551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23758747 23758749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1938 nt):
ATGGAACCATTGAAATTTAGGGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCAATGCCTGGACACTA
TACAGCAGAATTTATATAGGAATGTGATGTTAGAGAACTACAGAAACCTGGTCTTCTTGGGTATTGTTGT
CTCTAAGCCAGACCTGATCACCTGTCTGGAACAAGAAAAAGAGCCTTGGACTAGAAAGAGACATAGGATG
GTGGCCGAACCCCCAGTTATTTGTTCTCATTTTGCCCAAGACTTTTCACCAGAGCAGAACATAAAAGATT
CTTTCCAAAAAGTGACACCAAGAAGATATGGAAAATGTGAACATGAGAATTTACAGTTAAGTAAAAGTGT
GGATGAGTGCAAAGTGCAAAAAGGAGGTTATAATGGACTTAACCAATGTTTGCCAACTACCCAGAGCAAA
ATATTTCAATGTGATAAATATATGAAAATCTTTCATAAATTTTCAAATTTAAATGGACATAAGGTAAGAC
ACACCAGAAAAAAACCTTTTAAATATAAAGAATTTGGCAAATCATTTTGCATATTTTCAAACCTAACTCA
ACATAAAATAATTTGTACTAGAGTAAATTTCTACAAATGTGAAGACTGTGGAAAAGCCTTTAATGGATCC
TCAATCTTTACTAAACATAAAAGAATTCATATTGGAGAGAAATCGTACATATGTGAAGAATGTGGCAAAG
CCTGTAACCAGTTCACAAACCTTACTACACATAAGATAATTTATACTAGAGACAAACTCTACAAACGTGA
AGAATGTAGCAAAGCCTTTAACCTGTCGTCACACATTACAACACATACAATAATTCATACTGGAGAGAAT
CCCTACAAACGTGAAGAATGTGACAAAGCCTTTAATCAGTCCTTAACCCTTACTACACATAAGATAATTC
ATACCAGAGAGAAACTCAATGAATATAAGGAATGTGGCAAAGCTTTCAACCAGTCCTCACACCTTACCAG
ACATAAGATAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAACCAGTCC
TCACACCTTACCAGACATAAGATAATTCATACTGGAGAGAAGCCCTACAGATGTGAAGAATGTGGCAAAG
CCTTTAGGCAGTCCTCACACCTTACTACACATAAGATAATTCATACTGGAGAGAAACCCTACAAATGTGA
AGAATGTGGCAAAGCTTTTAACAAGTCCTCACACCTTACTAGACATAAGAGCATTCATACTGGAGAAAAA
CCCTACCAGTGTGAAAAATGTGGCAAAGCTTCTAACCAATCCTCAAACCTTACTGAACATAAGAATATTC
ATACTGAAGAGAAACCATACAAATGTGAAGAATGTGGGAAAGCCTTTAACCAGTTCTCAAACCTTACTAC
ACATAAAAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAACCAGTCC
TCAATCCTTACTACACATAAGAGAATTCATACTGGAGAGAAATCCTACAAATGTGAAGAATGTGGCAAAG
CTTTCTATCGATCCTCAAAACTTACTGAACATAAGAAAATTCATACTGGAGAGAAACCCTACACATGTGA
AGAATGTGGCAAAGCCTTTAACCATTCCTCACATCTTGCTACACATAAGGTAATTCATACTGGAGAGAAA
CCCTACCAATGTGAAGAATGTGGTAAAGCCTTTAACCAGTCCTCACACCTTACTAGACATAAGAGAATTC
ATACTGGAGAGAAACCCTACCAATGTGAAAAATGTGGCAAAGCTTTTAACCAGTCCTCAAACCTTACTGG
ACATAAGAAAATTCATACTGGTGAGAAACTCTACAAACCTAAAAGATGTAACAGTGATTTTGAAAACACT
TCAAAGTTTTCTAAACATAAAAGAAATTATGCTGGTGAGAAATCTTAG

Translation (645 aa):
MEPLKFRDVAIEFSLEEWQCLDTIQQNLYRNVMLENYRNLVFLGIVVSKPDLITCLEQEKEPWTRKRHRM
VAEPPVICSHFAQDFSPEQNIKDSFQKVTPRRYGKCEHENLQLSKSVDECKVQKGGYNGLNQCLPTTQSK
IFQCDKYMKIFHKFSNLNGHKVRHTRKKPFKYKEFGKSFCIFSNLTQHKIICTRVNFYKCEDCGKAFNGS
SIFTKHKRIHIGEKSYICEECGKACNQFTNLTTHKIIYTRDKLYKREECSKAFNLSSHITTHTIIHTGEN
PYKREECDKAFNQSLTLTTHKIIHTREKLNEYKECGKAFNQSSHLTRHKIIHTGEKPYKCEECGKAFNQS
SHLTRHKIIHTGEKPYRCEECGKAFRQSSHLTTHKIIHTGEKPYKCEECGKAFNKSSHLTRHKSIHTGEK
PYQCEKCGKASNQSSNLTEHKNIHTEEKPYKCEECGKAFNQFSNLTTHKRIHTGEKPYKCEECGKAFNQS
SILTTHKRIHTGEKSYKCEECGKAFYRSSKLTEHKKIHTGEKPYTCEECGKAFNHSSHLATHKVIHTGEK
PYQCEECGKAFNQSSHLTRHKRIHTGEKPYQCEKCGKAFNQSSNLTGHKKIHTGEKLYKPKRCNSDFENT
SKFSKHKRNYAGEKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH