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Report for CCDS11254.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11254.2 Public Homo sapiens 17 EFCAB5 24 110 108 CCDS HistoryNCBI Gene:374786Re-query CCDS DB by CCDS ID:11254.2Re-query CCDS DB by GeneID:374786See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11254.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394835.8 ENSP00000378312.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394835.8Link to Ensembl Protein Viewer:ENSP00000378312.3Re-query CCDS DB by Nucleotide ID:ENST00000394835Re-query CCDS DB by Protein ID:ENSP00000378312
Original member Current member NCBI NM_198529.4 NP_940931.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198529.4Link to Protein Sequence:NP_940931.3Re-query CCDS DB by Nucleotide ID:NM_198529Re-query CCDS DB by Protein ID:NP_940931Link to BLAST:NP_940931.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940931.3 1503 A4FU69-1 1503 100% 0 0

Chromosomal Locations for CCDS 11254.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 29941797 29941838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29942240 29942302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29943565 29943649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29968791 29969367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29993165 29993321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29996312 29996360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29999906 29999976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30034230 30034385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30051118 30051217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30053255 30054148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30055888 30055965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30056064 30056156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30057676 30057890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30059545 30059701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30078215 30078504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30080072 30080241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30080753 30080981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30082891 30083043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30087063 30087166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30090421 30090674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30091871 30092157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30092840 30092936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30107834 30108024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4512 nt):
ATGAATGAGTCAGCATCTCAAGAGGAACTCAGACCTGCTCAGGAAAACAGAAAAGAAGACAAAGAGAGGA
AATGGAACTTAACTGAAGTGAAAGAGCTTCATGAGACCTTACAGAGTGTGCCAGACGTTCCTGTAAAAGA
GGACACCAACAGTGTGGTGGAGAAAGCAATGGATGAAATCAAATCCCAAGAATTAAACCTGGAGGGGCAG
CGAAAAATTTCACCTGGTTCAATAAAGGACTCTAAAACTGAAGCCTCAGGTAATATTGCAATTAGAAAAT
CTGCAAAAGTGATTTTTGCTTTAGATGAAACTGAACTGAAATCAAAGCCAGAGCACACATGGAAGAAAAA
CCTTTTTGAAAGAATGGAGGCAAGAGCCCAAGCAATGCAGCAGAAAATAATAGATAAGGAAAATCTGAAG
AAGGAACTAGAAAAAAAGGCTGAAAAAAAACTCCCTAGGGATAATTTGGCCAAAGAGTGGTTTAATACTG
ACAGCATGACACTGAATAATACTGCATATTTGCTTGACAAACTTCTACCCACCTTAGTTCCTGGAGTAGA
AAACATGTTAACTCAAGTAGAAAAGAAGAAGGTTTTGACAGAAGCTGATACTCCAAGCAAGTTTGACCCA
ATTAATTATTTGGGGGAATATTTAATAAGAAACAATCCTAATTATATCAAAGACCCAGGAATGTCTGGTT
ACCAGAGGTTGATGAAAGAAGTCACAGAAGACCTGAAGATATATGTTCCTGACACTATCTGCAACAGAGT
ATCCAAGATGAAGGAGAATGTTAAACAGAATAGAAAACAAAGAGAAAGCATAGACAAAATCATAGTCAAG
GTGGCCAACACACGGAAACAGGCTCTGCAGGAGCAATTCGATGAATGGATTCTAGACCCTAAAGGAATGA
TTCCTAAGTCAGTGATTCAGAATGTTCTTCAAGAATTCTTTCAAAATCCAGATTTCAAGCTTGGATCACA
CTGCAAACAACTGGATATTACTGACTCAACAGAACCAAGATTGAACAAAATGGAATTTACAGAATACATC
TCTTCACATATTAAAGACTTGAAGAGTGAAATGTTTGAGGAACTTCTTAAGCACCTTTGCCACTCTGCAG
ATGAATTTCGGGAGGTCATAAAAGCTGACATGCGGAGGCAGATGTTCGCTGAACTCTTCCTACATTGTGA
CCACGGGAAGGTAGGGTTTTTGGATCGGCAGAGGACATTGGCCCTGCTGGAATTGTTCTATGACCATAGT
TCACAAATGCTTAGGAGTTTACTTCGAAACCCACGACAATGGCCATTCATTGAATTTGAAGAGATAAACT
TGACTGAGTTGTGGGGAGACATGGATAATCAGAAACACATTTATGAAGGTTTTGACAAAGTGCTCTTGGA
GATGAATACATTACTTTCTGCAAATCATGCTAGCAAAACCCAAAGTAAATTATTAGAAAGTCCAGATCAA
CCTAAACTTAACGAACAGAGAACATCAACACCATCACCAAACCCGCCAGAACAGCAGAGAGGAGTAACTG
CAGAACAAGGACCACAAAGAATTTCAATTGAAGAACAACAACAAGGCAAAAAGCCAACTGCAGAGCAAGA
ACTGTACATAGAATCAGTAATAGAACCAGGAACACACACAGAGTCAACTCTAGAACAAGGGTCAAGTAGA
AGGTTACTGACAGAACAAGAAACACACAGAGAGTCAACTACAGAACAAGGACAGCACAAAGGGTCAATAG
AAGGACAAGGACCACGCAGAGTGTCAGTTTCAGAACAAGGATCAAGCAGAGAGTCAGTTGCAGAACAAGG
GTCACGCAGAGAGTCTATTGCAGAACAAGATCGACACAAAGGGTCAGTAGCAGAACAAGGATCACGCAGA
ATGTCAGCTGCAGAACAGGGATCACTCAGAGAGTCAGTAATAGAAGAACCATACCAAAAATCAGAACAAG
GACCTTATGGAGAGATAATTTCAGAAGAGCAAGAAGACATAGGCTCAACTTCACAATCAAGAAAAGATAG
TATCTTAAAAAGTACAAAATATGGGGAACCTATAACCTCTGAGTACATTGAAGTCCCTCTACAGGAAAAG
AGGTCTTGGGAACAAACATATGAAGAGGAAATATTCCTGAGTTCTGAACTGCAAGAGGAAGTTCCAACCT
TAAGCAGAAAAGATCACTTTCCAGAAACTACAAAAAAGGAAGTTCAGAAAGACAAGCCCTGTGAACCCAA
GTCCCAAAAAATAGAAGGAAAGTCATGGTCAGGTGAATTTTTTACTTGTAACTGGAAAATGAAGTATGTC
ACATTTGAAGATGAGGAACAGGCAAACTTAATCTATGGTAACTCCAGGTTCACAGATTTACACTCAATTA
TCAGAAATATTCAGTCTTGCAAGGAGGTAAAAGGCAGAACTGCCTTCAATGGAGTTTCATTCAATCTGCT
CCAGTTTGTGCAACTCCTGGAGACATTTGTTGGTGAAGACGCTCCCTTGAGTGTCAGCGAGACTCTCACC
TCCTTTTTTAAGGAGGGCTATGTTGAAACAGAACAAGAGAAAATGAATGCCTTAGAACAGTTTAGCCAAA
ATGCTTTCCAAGTCCGACAGAGGCTTCTCCTAGAAGCCATCTTTCAGAAGTGGGACAGTGATGGCTCAGG
CTTCCTGGATCTGAAGGAAGTTGATGAACTCTTGTACACATACAAGGAGGGAATGGAAAAAGAATCTATG
AAGAAAGCTAAACTACACATCCAATTTCCAAAGCCACACCCTGGTCACGAAGTGAGATTGTCTTCAAAAC
AATTTCAGAATTACATAGAATTGGTTGTGTCTGAACTCAGGGGCAATGAAGACCAAGTTCTGGAAAGTGT
TGTGGAATTTCTGATGAATGCTTTAGAGAGGAGCCACATTGAGAGTCTGAGGAATTCTGCCAGGCGGAAA
TGGCTGCACCAAATCCAATGTGCTGCAGAGACAAGTGGGGTGTCCCTAGAGCCGGTGTATAGTGAGACCT
TTAAGGCCCTCATGCAGGATGCTGAAGCCCATGGAAATAAAAAGATCAGTGCTCACATTTCCCTCTTAGA
AGAAAACCTACTACTGCCTGAGAAAGGGAATGTTCTATTGAGGAATGTGGCTTGTACCTTAGATGATGCT
CAATTTGTACTGAACAGAGTGCTCTACAGGGACATGAAAGGAATCAGCTTTACAGTAGTGGATGAAGGGA
AGCCAATCCATGTTCCCCAAGTTCAGTACCATGGGAACATCTTCTTCTGGAACCAGTCCCGTAATAAGCA
TGATTATAATGGTTCATTCCTGGCTCTGCCTCTTCAAGATGCATATATGAGGATCTTTGGGGTCTTGGCT
GTTGATACCCTTAGAGATCCCCACGAAATAAACATCTTTCTACCTCATGAGATCAGATTCTATCAGGGTG
TTGCTAATGTCTTTAGCACTGCCTATCACTACGTCCACAGCCGGGAGCACATTCTGCATATTGTGATCAC
TGGCATAGGCTGGCTTTATGACGTCACATCCAGCATCACCTCCATCACTACGTACTTTGTAGAGCCTAGC
CCAGCCCAGGATTCAGACTATGTTTTACGCAACATGATGGTTACAGGGCAGCTGGGTCTAACAGAAATCC
ACAAAAATCCTCCTACCATCCACAGGAAGTCATGCATCTTCAGAGATTTCCTCTTTAAATGTACTGACAG
TTCAGAAGTTGTTCTGGCTTCTGCCTGTGGAGAAACGCATATAGTAGTTCCACTTCGTGAGAGAACAGGA
GAGGCTCTGGGAGTCCTCGATTTTAACATCGGCCAAAATAGGATGTTGTTGTGTCAAGAATATAAAGATC
TACAGAAAATGATGAAAGTGGTCCAAGTGGCCTGCTATGAAATACTTGGCGAGTTCTCTGGAGAGATAAA
GAAAAAATATATCTTAGAGATTGAAAATGTCAGGGAAGTCCAGCGGGCAGGAATTCTCTTCTTCCGAATC
ATGCTGCTCGAGCTACAGGAAAGCATCCAACTACTCAATTCCATGGAATTTGTGTCACTGTTGCTCTATG
ACCATACTCTTGTAACAGAGCCAAATTCTCCTCAAGACAGCAAATCTATGGAGTTGGAAGCCAACGTGAA
ACTAGTGCGTGACATCCTGAAGGCGGTTATCTTGTTCTTTCATCCAGAGTTGGAATTTTCAAGTGACTTT
GGAAGTTGGGATAAGTGTAAATTTTATGTTAACAAATATTTAGTCAACAATATTTGTGCCTTTGATCCAA
CTGCCAAGCATGTGGAAGTTAATGTACAGCTTATTGATGAATATATCAGAGATCATTCCCGAACTGAAGT
ATGGAAATTTGGTAATGTTGTCATTGAACATCTATACCACTGGATACACATCTGTTCAGCTCTCATGAAG
ATAACCAAACAACTAAATAGTGGTATTACACCTCCGTTGCCCTCCAAGACTGACAATTATATGTATGCAA
AAATGCCAGGGGAAGGTTTGCAAGAGAAGTGA

Translation (1503 aa):
MNESASQEELRPAQENRKEDKERKWNLTEVKELHETLQSVPDVPVKEDTNSVVEKAMDEIKSQELNLEGQ
RKISPGSIKDSKTEASGNIAIRKSAKVIFALDETELKSKPEHTWKKNLFERMEARAQAMQQKIIDKENLK
KELEKKAEKKLPRDNLAKEWFNTDSMTLNNTAYLLDKLLPTLVPGVENMLTQVEKKKVLTEADTPSKFDP
INYLGEYLIRNNPNYIKDPGMSGYQRLMKEVTEDLKIYVPDTICNRVSKMKENVKQNRKQRESIDKIIVK
VANTRKQALQEQFDEWILDPKGMIPKSVIQNVLQEFFQNPDFKLGSHCKQLDITDSTEPRLNKMEFTEYI
SSHIKDLKSEMFEELLKHLCHSADEFREVIKADMRRQMFAELFLHCDHGKVGFLDRQRTLALLELFYDHS
SQMLRSLLRNPRQWPFIEFEEINLTELWGDMDNQKHIYEGFDKVLLEMNTLLSANHASKTQSKLLESPDQ
PKLNEQRTSTPSPNPPEQQRGVTAEQGPQRISIEEQQQGKKPTAEQELYIESVIEPGTHTESTLEQGSSR
RLLTEQETHRESTTEQGQHKGSIEGQGPRRVSVSEQGSSRESVAEQGSRRESIAEQDRHKGSVAEQGSRR
MSAAEQGSLRESVIEEPYQKSEQGPYGEIISEEQEDIGSTSQSRKDSILKSTKYGEPITSEYIEVPLQEK
RSWEQTYEEEIFLSSELQEEVPTLSRKDHFPETTKKEVQKDKPCEPKSQKIEGKSWSGEFFTCNWKMKYV
TFEDEEQANLIYGNSRFTDLHSIIRNIQSCKEVKGRTAFNGVSFNLLQFVQLLETFVGEDAPLSVSETLT
SFFKEGYVETEQEKMNALEQFSQNAFQVRQRLLLEAIFQKWDSDGSGFLDLKEVDELLYTYKEGMEKESM
KKAKLHIQFPKPHPGHEVRLSSKQFQNYIELVVSELRGNEDQVLESVVEFLMNALERSHIESLRNSARRK
WLHQIQCAAETSGVSLEPVYSETFKALMQDAEAHGNKKISAHISLLEENLLLPEKGNVLLRNVACTLDDA
QFVLNRVLYRDMKGISFTVVDEGKPIHVPQVQYHGNIFFWNQSRNKHDYNGSFLALPLQDAYMRIFGVLA
VDTLRDPHEINIFLPHEIRFYQGVANVFSTAYHYVHSREHILHIVITGIGWLYDVTSSITSITTYFVEPS
PAQDSDYVLRNMMVTGQLGLTEIHKNPPTIHRKSCIFRDFLFKCTDSSEVVLASACGETHIVVPLRERTG
EALGVLDFNIGQNRMLLCQEYKDLQKMMKVVQVACYEILGEFSGEIKKKYILEIENVREVQRAGILFFRI
MLLELQESIQLLNSMEFVSLLLYDHTLVTEPNSPQDSKSMELEANVKLVRDILKAVILFFHPELEFSSDF
GSWDKCKFYVNKYLVNNICAFDPTAKHVEVNVQLIDEYIRDHSRTEVWKFGNVVIEHLYHWIHICSALMK
ITKQLNSGITPPLPSKTDNYMYAKMPGEGLQEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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