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Report for CCDS10624.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10624.2 Public Homo sapiens 16 TNRC6A 24 110 108 CCDS HistoryNCBI Gene:27327Re-query CCDS DB by CCDS ID:10624.2Re-query CCDS DB by GeneID:27327See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 10624.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395799.8 ENSP00000379144.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395799.8Link to Ensembl Protein Viewer:ENSP00000379144.3Re-query CCDS DB by Nucleotide ID:ENST00000395799Re-query CCDS DB by Protein ID:ENSP00000379144
Original member Current member NCBI NM_014494.4 NP_055309.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014494.4Link to Protein Sequence:NP_055309.2Re-query CCDS DB by Nucleotide ID:NM_014494Re-query CCDS DB by Protein ID:NP_055309Link to BLAST:NP_055309.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055309.2 1962 Q8NDV7-1 1962 100% 0 0

Chromosomal Locations for CCDS 10624.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 24729842 24729846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24730253 24730300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24750726 24750813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24758339 24758360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24776933 24777358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24789232 24791817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24793473 24793649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24794544 24794719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24795907 24795939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24797490 24797570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24797915 24797966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24804177 24804319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24804705 24804851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24805014 24805151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24805605 24805733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24806206 24806283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24806574 24806784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24809350 24809481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24815147 24815305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24816816 24816956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24818593 24818700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24820139 24820360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24822077 24822147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24822874 24823013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24823432 24823807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5889 nt):
ATGAGAGAATTGGAAGCTAAAGCTACCAAAGACGTAGAAAGAAATCTTAGCAGGGATTTAGTGCAAGAAG
AAGAACAGTTGATGGAAGAAAAGAAAAAGAAAAAAGACGACAAGAAAAAGAAGGAAGCTGCTCAAAAGAA
GGCCACTGAACAAAAAATCAAAGTGCCAGAACAGATAAAGCCCAGTGTAAGCCAGCCTCAGCCTGCCAAC
TCTAATAACGGCACTTCCACAGCAACCAGCACTAATAATAATGCCAAGCGAGCTACAGCCAACAATCAGC
AGCCACAGCAGCAGCAGCAACAGCAGCAGCCGCAGCAGCAGCAGCCACAGCAGCAGCCACAGCCGCAGCC
GCAGCAGCAGCAGCCACAGCAGCAGCCACAGGCCTTGCCTCGGTATCCTCGTGAAGTACCTCCACGATTT
CGCCACCAGGAACACAAACAGCTTCTAAAGAGGGGTCAGCATTTTCCTGTTATAGCAGCAAACCTTGGAT
CTGCTGTTAAGGTGTTAAACAGCCAGTCAGAAAGCAGTGCTTTAACAAATCAACAGCCACAAAATAACGG
AGAGGTGCAGAACAGCAAAAACCAGTCAGATATAAACCACAGTACTTCAGGATCCCATTATGAAAATTCC
CAGCGGGGACCTGTGTCTTCTACAAGTGATTCTAGCACAAACTGTAAGAATGCTGTTGTAAGTGACTTGT
CGGAAAAAGAAGCATGGCCCTCAGCCCCTGGCAGTGATCCGGAGTTGGCTTCAGAATGTATGGATGCTGA
TTCTGCCTCCAGTTCTGAATCAGAGAGAAACATCACTATCATGGCTTCAGGGAACACAGGTGGTGAAAAA
GATGGCCTTCGGAATAGCACTGGACTTGGTTCCCAAAACAAGTTTGTAGTTGGTAGCAGCAGCAATAATG
TGGGCCATGGAAGTAGTACTGGGCCATGGGGTTTTTCCCATGGAGCCATAATAAGCACATGTCAGGTCTC
TGTGGATGCTCCTGAAAGCAAATCTGAAAGTAGCAACAATAGAATGAATGCTTGGGGCACTGTAAGTTCT
TCATCAAATGGAGGGTTAAATCCAAGCACTTTGAATTCAGCTAGCAACCATGGTGCCTGGCCAGTATTAG
AGAACAATGGACTTGCCCTAAAAGGGCCTGTAGGGAGTGGTAGTTCTGGCATTAATATTCAGTGCAGTAC
TATAGGCCAGATGCCTAACAATCAGAGTATTAACTCTAAAGTGAGTGGTGGTTCTACCCATGGTACCTGG
GGAAGCCTTCAGGAAACTTGTGAATCTGAAGTAAGTGGTACACAGAAGGTTTCATTCAGTGGTCAACCTC
AAAATATTACCACTGAAATGACTGGACCAAATAACACTACTAACTTTATGACCTCTAGTTTACCAAACTC
CGGTTCAGTGCAGAATAATGAGCTGCCTAGTAGTAACACAGGGGCCTGGCGTGTGAGCACAATGAATCAT
CCTCAGATGCAGGCTCCATCAGGTATGAATGGCACTTCCCTTTCTCACCTTAGCAATGGAGAGTCAAAAA
GTGGAGGCTCTTATGGTACTACATGGGGTGCCTATGGTTCTAATTACTCTGGAGACAAATGTTCAGGCCC
TAATGGCCAAGCTAATGGTGACACTGTGAATGCAACTCTAATGCAGCCTGGCGTAAATGGTCCTATGGGC
ACTAACTTTCAAGTTAACACAAACAAAGGAGGTGGTGTGTGGGAATCTGGTGCAGCAAACTCCCAGAGTA
CATCATGGGGAAGTGGAAATGGCGCAAATTCTGGAGGAAGTCGAAGAGGATGGGGAACCCCTGCACAAAA
CACTGGCACTAATTTACCCAGCGTTGAGTGGAACAAACTGCCTAGCAATCAGCATTCCAATGATAGTGCA
AATGGCAATGGTAAGACGTTTACAAATGGATGGAAATCTACTGAGGAAGAGGATCAGGGTTCTGCCACAT
CTCAGACAAATGAGCAAAGCAGTGTGTGGGCCAAAACAGGAGGTACAGTGGAGAGCGATGGTAGTACAGA
AAGCACTGGACGCCTTGAGGAAAAAGGAACTGGGGAAAGTCAGAGTAGAGACAGAAGAAAAATTGATCAG
CACACATTACTCCAAAGCATTGTAAACAGAACTGACTTAGATCCACGTGTCCTGTCCAACTCTGGTTGGG
GACAGACTCCTATTAAGCAGAATACTGCCTGGGATACAGAAACATCACCTAGAGGGGAACGAAAGACTGA
CAATGGGACAGAGGCCTGGGGAAGCTCTGCAACACAGACTTTTAACTCAGGGGCATGTATAGATAAGACT
AGCCCTAATGGTAATGATACCTCATCTGTATCAGGGTGGGGCGATCCCAAACCTGCTCTGAGGTGGGGAG
ATTCCAAAGGCTCAAACTGCCAGGGGGGGTGGGAAGATGATTCTGCTGCTACAGGAATGGTCAAGAGCAA
TCAGTGGGGGAATTGCAAAGAGGAGAAGGCTGCATGGAATGACTCGCAAAAGAATAAACAGGGATGGGGT
GATGGACAAAAATCAAGCCAAGGGTGGTCTGTTTCTGCCAGTGATAACTGGGGAGAAACTTCAAGGAATA
ACCATTGGGGTGAGGCCAATAAGAAATCCAGCTCAGGAGGTAGTGACAGTGACAGGTCCGTTTCCGGTTG
GAACGAACTTGGTAAAACTAGTTCTTTCACTTGGGGAAACAACATAAATCCAAATAATTCATCAGGATGG
GATGAATCTTCTAAACCTACTCCTTCCCAGGGATGGGGAGACCCTCCAAAGTCTAATCAGTCTCTAGGTT
GGGGAGATTCGTCAAAGCCAGTCAGCTCTCCAGACTGGAACAAGCAACAAGACATTGTTGGATCTTGGGG
AATCCCACCAGCTACAGGCAAACCTCCTGGTACAGGCTGGCTGGGGGGACCTATACCAGCCCCAGCAAAA
GAAGAAGAACCCACAGGCTGGGAGGAACCATCCCCAGAATCTATACGTCGCAAAATGGAGATTGATGATG
GAACTTCAGCTTGGGGAGATCCAAGCAAATACAACTACAAAAATGTGAACATGTGGAACAAAAACGTCCC
AAATGGCAACAGCCGTTCAGACCAGCAAGCACAGGTACATCAGCTGCTAACGCCTGCAAGTGCCATCTCA
AACAAAGAGGCAAGCAGTGGCTCTGGCTGGGGTGAGCCCTGGGGGGAGCCTTCTACTCCAGCCACAACTG
TGGATAATGGTACTTCAGCATGGGGTAAGCCCATAGACAGTGGTCCCAGCTGGGGGGAACCCATTGCTGC
GGCATCCAGCACATCCACGTGGGGCTCCAGCTCTGTTGGTCCACAAGCATTAAGCAAATCTGGGCCAAAA
TCTATGCAAGATGGCTGGTGTGGTGATGATATGCCATTGCCTGGAAATCGCCCCACTGGCTGGGAAGAGG
AAGAGGATGTGGAGATTGGAATGTGGAATAGTAATTCATCTCAAGAGCTTAACTCATCTTTAAATTGGCC
ACCATATACAAAGAAAATGTCATCGAAGGGTCTGAGTGGCAAAAAAAGGAGAAGGGAAAGGGGAATGATG
AAAGGTGGAAACAAACAAGAAGAAGCGTGGATAAATCCATTTGTTAAACAGTTTTCAAACATCAGTTTTT
CGAGAGACTCACCAGAGGAAAATGTACAAAGCAATAAGATGGACCTTTCTGGAGGAATGTTACAAGACAA
ACGAATGGAGATAGATAAACATAGCCTAAATATTGGTGATTACAATCGAACGGTCGGGAAAGGCCCTGGT
TCTCGGCCTCAGATTTCCAAAGAGTCTTCCATGGAGCGCAATCCTTATTTTGATAAGGATGGCATTGTAG
CAGATGAATCCCAAAACATGCAGTTTATGTCCAGTCAAAGCATGAAGCTTCCCCCTTCAAATAGTGCACT
ACCTAACCAGGCCCTTGGCTCCATAGCAGGGCTGGGTATGCAAAACTTGAATTCTGTTAGACAGAATGGC
AATCCCAGTATGTTTGGTGTTGGAAACACAGCAGCACAACCCCGGGGCATGCAGCAGCCTCCAGCACAAC
CTCTTAGTTCATCTCAGCCTAATCTCCGTGCTCAAGTGCCTCCTCCATTACTCTCCCCTCAGGTTCCAGT
TTCATTGCTGAAGTATGCACCAAACAACGGTGGCCTGAATCCACTCTTTGGCCCTCAACAGGTAGCCATG
CTGAACCAGCTATCCCAGCTAAACCAGCTTTCTCAGATCTCCCAGTTACAGCGATTGTTAGCGCAGCAGC
AAAGGGCGCAGAGTCAGAGAAGCGTGCCTTCTGGGAACCGGCCGCAGCAAGACCAGCAGGGTCGACCTCT
TAGTGTGCAGCAGCAAATGATGCAACAATCTCGTCAACTTGATCCAAACCTGTTGGTGAAGCAGCAGACT
CCACCATCTCAGCAGCAGCCACTCCATCAGCCAGCCATGAAGTCTTTCCTTGACAATGTCATGCCCCACA
CTACACCTGAGCTGCAAAAAGGGCCATCACCAATAAATGCTTTCAGCAACTTCCCTATAGGCTTGAACTC
AAACTTGAATGTAAATATGGATATGAACAGTATTAAAGAGCCACAGTCAAGACTAAGGAAGTGGACGACA
GTGGACAGCATTTCTGTGAACACATCTTTGGATCAAAACTCCAGCAAACATGGTGCTATTTCAAGTGGTT
TCAGGCTGGAAGAGTCTCCATTTGTTCCCTATGACTTTATGAACAGCAGTACTTCACCAGCCAGTCCTCC
AGGTTCAATAGGAGATGGCTGGCCACGTGCCAAATCGCCTAACGGCTCTAGCAGTGTTAATTGGCCACCA
GAATTTCGTCCTGGTGAGCCATGGAAAGGTTATCCAAACATTGACCCTGAAACTGACCCTTACGTCACTC
CTGGCAGTGTCATAAACAATCTTTCAATTAATACTGTGCGGGAAGTTGACCACCTCAGGGACAGGAACAG
TGGGTCATCCTCATCCTTGAACACCACGCTGCCTTCAACTAGTGCCTGGTCATCCATTCGTGCCTCCAAC
TACAACGTTCCCCTCAGCAGTACAGCACAAAGCACTTCAGCCAGAAATAGTGATTCCAAATTGACATGGT
CTCCTGGTTCAGTTACAAACACCTCTCTGGCTCATGAGCTGTGGAAGGTCCCTTTGCCACCTAAAAACAT
CACTGCTCCGTCCCGCCCACCTCCGGGACTGACTGGTCAGAAGCCACCCTTGTCTACGTGGGATAATTCT
CCCCTTCGTATAGGTGGAGGATGGGGAAATTCTGACGCCAGATATACCCCAGGTTCCAGCTGGGGTGAGA
GCAGCTCAGGGAGAATAACAAATTGGCTTGTTCTAAAAAACCTTACACCTCAGATCGATGGCTCAACTCT
GCGCACTCTGTGCATGCAGCACGGCCCGCTGATCACATTCCACCTGAACCTCCCTCACGGAAATGCTCTG
GTCCGCTACAGTTCAAAAGAAGAGGTAGTGAAGGCACAAAAGTCTCTGCACATGTGTGTACTGGGGAACA
CTACTATTCTTGCTGAGTTTGCCAGTGAAGAGGAGATCAGTCGTTTCTTTGCACAAAGCCAGTCTCTGAC
CCCTTCTCCCGGCTGGCAGTCTCTCGGGTCCAGCCAGAGCCGGCTGGGCTCCCTCGACTGTTCCCACTCA
TTCTCCAGCCGGACCGATCTCAATCACTGGAATGGTGCTGGGCTGTCGGGAACTAACTGTGGAGACCTTC
ACGGCACTTCACTCTGGGGGACCCCGCATTATTCCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCC
CCGAGGAATTAGCAGCCCATCTCCCATTAACGCTTTTCTTTCTGTTGACCACCTGGGTGGGGGTGGAGAG
TCCATGTAA

Translation (1962 aa):
MRELEAKATKDVERNLSRDLVQEEEQLMEEKKKKKDDKKKKEAAQKKATEQKIKVPEQIKPSVSQPQPAN
SNNGTSTATSTNNNAKRATANNQQPQQQQQQQQPQQQQPQQQPQPQPQQQQPQQQPQALPRYPREVPPRF
RHQEHKQLLKRGQHFPVIAANLGSAVKVLNSQSESSALTNQQPQNNGEVQNSKNQSDINHSTSGSHYENS
QRGPVSSTSDSSTNCKNAVVSDLSEKEAWPSAPGSDPELASECMDADSASSSESERNITIMASGNTGGEK
DGLRNSTGLGSQNKFVVGSSSNNVGHGSSTGPWGFSHGAIISTCQVSVDAPESKSESSNNRMNAWGTVSS
SSNGGLNPSTLNSASNHGAWPVLENNGLALKGPVGSGSSGINIQCSTIGQMPNNQSINSKVSGGSTHGTW
GSLQETCESEVSGTQKVSFSGQPQNITTEMTGPNNTTNFMTSSLPNSGSVQNNELPSSNTGAWRVSTMNH
PQMQAPSGMNGTSLSHLSNGESKSGGSYGTTWGAYGSNYSGDKCSGPNGQANGDTVNATLMQPGVNGPMG
TNFQVNTNKGGGVWESGAANSQSTSWGSGNGANSGGSRRGWGTPAQNTGTNLPSVEWNKLPSNQHSNDSA
NGNGKTFTNGWKSTEEEDQGSATSQTNEQSSVWAKTGGTVESDGSTESTGRLEEKGTGESQSRDRRKIDQ
HTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGERKTDNGTEAWGSSATQTFNSGACIDKT
SPNGNDTSSVSGWGDPKPALRWGDSKGSNCQGGWEDDSAATGMVKSNQWGNCKEEKAAWNDSQKNKQGWG
DGQKSSQGWSVSASDNWGETSRNNHWGEANKKSSSGGSDSDRSVSGWNELGKTSSFTWGNNINPNNSSGW
DESSKPTPSQGWGDPPKSNQSLGWGDSSKPVSSPDWNKQQDIVGSWGIPPATGKPPGTGWLGGPIPAPAK
EEEPTGWEEPSPESIRRKMEIDDGTSAWGDPSKYNYKNVNMWNKNVPNGNSRSDQQAQVHQLLTPASAIS
NKEASSGSGWGEPWGEPSTPATTVDNGTSAWGKPIDSGPSWGEPIAAASSTSTWGSSSVGPQALSKSGPK
SMQDGWCGDDMPLPGNRPTGWEEEEDVEIGMWNSNSSQELNSSLNWPPYTKKMSSKGLSGKKRRRERGMM
KGGNKQEEAWINPFVKQFSNISFSRDSPEENVQSNKMDLSGGMLQDKRMEIDKHSLNIGDYNRTVGKGPG
SRPQISKESSMERNPYFDKDGIVADESQNMQFMSSQSMKLPPSNSALPNQALGSIAGLGMQNLNSVRQNG
NPSMFGVGNTAAQPRGMQQPPAQPLSSSQPNLRAQVPPPLLSPQVPVSLLKYAPNNGGLNPLFGPQQVAM
LNQLSQLNQLSQISQLQRLLAQQQRAQSQRSVPSGNRPQQDQQGRPLSVQQQMMQQSRQLDPNLLVKQQT
PPSQQQPLHQPAMKSFLDNVMPHTTPELQKGPSPINAFSNFPIGLNSNLNVNMDMNSIKEPQSRLRKWTT
VDSISVNTSLDQNSSKHGAISSGFRLEESPFVPYDFMNSSTSPASPPGSIGDGWPRAKSPNGSSSVNWPP
EFRPGEPWKGYPNIDPETDPYVTPGSVINNLSINTVREVDHLRDRNSGSSSSLNTTLPSTSAWSSIRASN
YNVPLSSTAQSTSARNSDSKLTWSPGSVTNTSLAHELWKVPLPPKNITAPSRPPPGLTGQKPPLSTWDNS
PLRIGGGWGNSDARYTPGSSWGESSSGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNAL
VRYSSKEEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPSPGWQSLGSSQSRLGSLDCSHS
FSSRTDLNHWNGAGLSGTNCGDLHGTSLWGTPHYSTSLWGPPSSSDPRGISSPSPINAFLSVDHLGGGGE
SM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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