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Report for CCDS8886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8886.1 Public Homo sapiens 12 NEUROD4 24 110 108 CCDS HistoryNCBI Gene:58158Re-query CCDS DB by CCDS ID:8886.1Re-query CCDS DB by GeneID:58158See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8886.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000242994.4 ENSP00000242994.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000242994.4Link to Ensembl Protein Viewer:ENSP00000242994.3Re-query CCDS DB by Nucleotide ID:ENST00000242994Re-query CCDS DB by Protein ID:ENSP00000242994
Original member Current member NCBI NM_021191.3 NP_067014.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021191.3Link to Protein Sequence:NP_067014.2Re-query CCDS DB by Nucleotide ID:NM_021191Re-query CCDS DB by Protein ID:NP_067014Link to BLAST:NP_067014.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067014.2 331 Q9HD90 331 100% 0 0

Chromosomal Locations for CCDS 8886.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 55026440 55027435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGTCAAAAACTTTTGTAAAATCCAAGGAGATGGGAGAGCTAGTCAACACACCATCCTGGATGGATAAAG
GTCTGGGCTCCCAAAATGAGGTGAAGGAGGAAGAGAGCAGACCAGGTACTTATGGGATGCTCAGCAGCTT
AACTGAAGAGCATGACAGTATTGAGGAAGAAGAAGAAGAGGAAGAAGATGGGGAGAAACCTAAGAGAAGG
GGTCCCAAGAAAAAGAAGATGACCAAAGCTCGCCTTGAGAGATTCAGGGCTCGAAGAGTCAAGGCTAATG
CCAGAGAACGGACCCGGATGCATGGCCTGAATGACGCCCTGGATAACCTGAGGCGAGTCATGCCATGCTA
CTCTAAAACCCAAAAACTTTCCAAGATAGAGACTCTTAGACTGGCCAGGAACTATATTTGGGCTTTATCT
GAAGTCCTGGAGACTGGCCAGACACCTGAAGGGAAAGGCTTTGTGGAGATGCTGTGTAAAGGGCTCTCTC
AGCCCACAAGCAACCTGGTGGCTGGATGTCTCCAACTGGGCCCTCAGTCTGTCCTCCTGGAGAAGCACGA
GGATAAATCTCCTATTTGTGACTCTGCCATCTCTGTCCACAACTTCAACTATCAGTCTCCGGGGCTTCCT
AGCCCTCCTTATGGTCATATGGAAACACATCTCCTTCATCTCAAGCCCCAAGTATTCAAGAGTTTGGGAG
AATCGTCCTTTGGGAGCCATCTGCCTGACTGCAGTACACCCCCTTATGAGGGCCCACTCACTCCACCCCT
GAGCATCAGTGGGAACTTCTCCTTGAAGCAAGATGGGTCTCCTGACCTAGAAAAATCCTACAGCTTCATG
CCACATTACCCTTCTTCAAGTCTAAGCTCAGGGCATGTGCATTCAACTCCTTTTCAGGCTGGTACCCCCC
GTTATGATGTTCCTATAGACATGTCCTATGATTCCTACCCCCATCATGGTATTGGGACCCAACTCAATAC
AGTCTTCACTGAGTGA

Translation (331 aa):
MSKTFVKSKEMGELVNTPSWMDKGLGSQNEVKEEESRPGTYGMLSSLTEEHDSIEEEEEEEEDGEKPKRR
GPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALS
EVLETGQTPEGKGFVEMLCKGLSQPTSNLVAGCLQLGPQSVLLEKHEDKSPICDSAISVHNFNYQSPGLP
SPPYGHMETHLLHLKPQVFKSLGESSFGSHLPDCSTPPYEGPLTPPLSISGNFSLKQDGSPDLEKSYSFM
PHYPSSSLSSGHVHSTPFQAGTPRYDVPIDMSYDSYPHHGIGTQLNTVFTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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