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Report for CCDS8718.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8718.1 Public Homo sapiens 12 TMTC1 24 110 108 CCDS HistoryNCBI Gene:83857Re-query CCDS DB by CCDS ID:8718.1Re-query CCDS DB by GeneID:83857See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8718.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000256062.9 ENSP00000256062.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000256062.9Link to Ensembl Protein Viewer:ENSP00000256062.5Re-query CCDS DB by Nucleotide ID:ENST00000256062Re-query CCDS DB by Protein ID:ENSP00000256062
Original member Current member NCBI NM_175861.3 NP_787057.2 Accepted alive Link to Nucleotide Sequence:NM_175861.3Link to Protein Sequence:NP_787057.2Re-query CCDS DB by Nucleotide ID:NM_175861Re-query CCDS DB by Protein ID:NP_787057Link to BLAST:NP_787057.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_787057.2 774 Q8IUR5-1 774 100% 0 0

Chromosomal Locations for CCDS 8718.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 29506846 29506986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29512043 29512120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29514482 29514604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29516349 29516486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29517427 29517571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29518472 29518607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29520618 29520720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29536209 29536317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29556857 29557000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29572105 29572218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29583407 29583574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29604178 29604299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29633147 29633336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29751666 29751872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29755709 29755885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29758704 29758777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29767898 29768053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2325 nt):
ATGAACCCATTCTACTTTCATGCAGTAAATATAATTTTACACTGCTTAGTGACTCTTGTGCTGATGTACA
CCTGTGATAAAACTGTCTTCAAGAATCGTGGACTTGCTTTTGTAACGGCATTGCTTTTTGCTGTACATCC
TATTCATACTGAGGCGGTGGCTGGGATCGTTGGCAGAGCGGACGTGTTAGCGTGTCTGCTGTTTCTATTG
GCCTTTCTCTCGTACAACAGGAGTCTGGATCAGGGCTGTGTTGGGGGAAGTTTCCCTTCCACGGTGTCTC
CCTTCTTCTTGCTGCTCAGTTTGTTTCTGGGGACCTGTGCGATGCTGGTGAAAGAGACAGGCATCACGGT
GTTTGGAGTGTGCTTGGTTTATGACCTCTTTTCCCTTTCCAACAAGCAAGACAAGTCGAGCAATGGGGCC
CTCTGTCCACGCAGCCCACAGCAGCCCGGGAGCCCCCAGCCCTCCTCACTGCCAGGCCATCCTCACCGGG
AGAATGGGAAGCAGCAGCGGTTCCCTCACAAAGGAGCTTGGGGTGGCTGCCACTCTCCACTGCCACCAGA
ACCCAAGAGCAGTGGATTCCCAGTGTCCCCACGAGCTGTGTGGTCCATGATGAGATTCCTCACCTATTCC
TACCTCTTGGCCTTCAATGTGTGGCTTCTGCTTGCACCCGTGACCCTGTGCTATGACTGGCAGGTCGGCA
GTATTCCTCTGGTAGAGACCATATGGGACATGCGGAACTTAGCCACCATCTTTCTGGCGGTTGTGATGGC
CTTATTGAGCCTGCACTGCTTAGCAGCCTTTAAGAGACTGGAGCACAAGGAGGTTTTAGTCGGCTTGTTG
TTCCTGGTGTTCCCGTTCATTCCAGCCAGCAACCTCTTCTTCAGGGTGGGTTTTGTGGTGGCGGAGAGAG
TCCTTTACATGCCTAGCATGGGCTACTGCATCCTTTTTGTGCATGGACTGAGCAAGCTCTGCACTTGGCT
GAATCGATGTGGGGCCACCACCCTGATTGTGTCCACTGTGTTGCTGCTGTTGCTTTTCTCTTGGAAAACT
GTGAAACAGAATGAAATTTGGCTGTCAAGAGAGTCCCTATTCAGGTCTGGAGTTCAAACTCTGCCCCACA
ATGCCAAGGTTCACTACAACTATGCCAATTTCCTGAAGGACCAAGGTCGGAACAAGGAAGCGATCTACCA
CTACAGAACAGCTCTCAAGTTGTATCCACGCCATGCAAGTGCGCTCAACAACCTTGGAACACTGACGAGA
GACACAGCAGAGGCAAAGATGTACTATCAGAGGGCTCTCCAGCTCCATCCACAGCATAACCGGGCTCTTT
TCAATCTGGGGAATCTCCTCAAGTCCCAGGAGAAAAAGGAAGAAGCTATCACCTTACTGAAGGATTCCAT
CAAATATGGTCCAGAGTTTGCAGATGCATATTCAAGCTTAGCTTCGTTATTGGCTGAGCAGGAGCGGTTT
AAAGAAGCTGAAGAAATATACCAAACTGGAATAAAGAACTGTCCAGACAGCTCAGATTTACACAACAACT
ATGGGGTTTTCTTAGTTGATACTGGCTTACCAGAAAAGGCAGTGGCCCATTACCAGCAGGCCATCAAACT
TAGCCCCAGTCATCACGTGGCCATGGTGAACTTGGGAAGACTCTACAGGTCACTGGGAGAGAACAGCATG
GCTGAAGAATGGTACAAGCGCGCCCTGCAGGTGGCACACAAAGCTGAGATATTGTCACCTTTGGGAGCAC
TGTATTACAACACTGGCCGATACGAAGAGGCTTTGCAGATTTACCAGGAAGCTGCAGCACTTCAGCCTTC
TCAGAGGGAGCTCCGCTTGGCACTGGCTCAGGTTTTGGCCGTGATGGGTCAGACAAAAGAAGCTGAAAAG
ATGACCAATCACATTGTGTCAGAGGAGACCGGATGCCTTGAATGCTATCGCCTCTTGTCAGCCATCTATA
GCAAGCAGGAGAACCACGACAAGGCACTTGATGCTATAGACAAGGCTCTCCAGCTGAAACCAAAGGACCC
AAAAGTCATTTCTGAACTTTTTTTCACAAAAGGAAACCAATTAAGAGAGCAGAACCTTCTCGACAAAGCT
TTTGAGAGCTATAGAGTGGCTGTGCAACTAAACCCAGACCAAGCACAGGCCTGGATGAACATGGGTGGCA
TCCAACACATCAAGGGAAAATATGTGTCTGCAAGAGCTTATTATGAGAGAGCCTTACAGCTGGTTCCAGA
CAGCAAACTGCTGAAGGAAAATCTTGCCAAATTGGATCGCCTAGAAAAACGATTACAAGAAGTTCGAGAA
AAGGATCAAACATAG

Translation (774 aa):
MNPFYFHAVNIILHCLVTLVLMYTCDKTVFKNRGLAFVTALLFAVHPIHTEAVAGIVGRADVLACLLFLL
AFLSYNRSLDQGCVGGSFPSTVSPFFLLLSLFLGTCAMLVKETGITVFGVCLVYDLFSLSNKQDKSSNGA
LCPRSPQQPGSPQPSSLPGHPHRENGKQQRFPHKGAWGGCHSPLPPEPKSSGFPVSPRAVWSMMRFLTYS
YLLAFNVWLLLAPVTLCYDWQVGSIPLVETIWDMRNLATIFLAVVMALLSLHCLAAFKRLEHKEVLVGLL
FLVFPFIPASNLFFRVGFVVAERVLYMPSMGYCILFVHGLSKLCTWLNRCGATTLIVSTVLLLLLFSWKT
VKQNEIWLSRESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTR
DTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERF
KEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSM
AEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEK
MTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPKVISELFFTKGNQLREQNLLDKA
FESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVRE
KDQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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