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Report for CCDS8579.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8579.1 Public Homo sapiens 12 APOBEC1 24 110 108 CCDS HistoryNCBI Gene:339Re-query CCDS DB by CCDS ID:8579.1Re-query CCDS DB by GeneID:339See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 8579.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229304.5 ENSP00000229304.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000229304.5Link to Ensembl Protein Viewer:ENSP00000229304.4Re-query CCDS DB by Nucleotide ID:ENST00000229304Re-query CCDS DB by Protein ID:ENSP00000229304
Original member Current member NCBI NM_001304566.1 NP_001291495.1 Accepted alive Link to Nucleotide Sequence:NM_001304566.1Link to Protein Sequence:NP_001291495.1Re-query CCDS DB by Nucleotide ID:NM_001304566Re-query CCDS DB by Protein ID:NP_001291495Link to BLAST:NP_001291495.1
Original member Current member NCBI NM_001644.5 NP_001635.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001644.5Link to Protein Sequence:NP_001635.2Re-query CCDS DB by Nucleotide ID:NM_001644Re-query CCDS DB by Protein ID:NP_001635Link to BLAST:NP_001635.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291495.1 236 P41238 236 100% 0 0
NP_001635.2 236 P41238 236 100% 0 0

Chromosomal Locations for CCDS 8579.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 7649547 7649696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7651023 7651141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7652438 7652835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7654605 7654632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7665857 7665872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGACTTCTGAGAAAGGTCCTTCAACCGGTGACCCCACTCTGAGGAGAAGAATCGAACCCTGGGAGTTTG
ACGTCTTCTATGACCCCAGAGAACTTCGTAAAGAGGCCTGTCTGCTCTACGAAATCAAGTGGGGCATGAG
CCGGAAGATCTGGCGAAGCTCAGGCAAAAACACCACCAATCACGTGGAAGTTAATTTTATAAAAAAATTT
ACGTCAGAAAGAGATTTTCACCCATCCATGAGCTGCTCCATCACCTGGTTCTTGTCCTGGAGTCCCTGCT
GGGAATGCTCCCAGGCTATTAGAGAGTTTCTGAGTCGGCACCCTGGTGTGACTCTAGTGATCTACGTAGC
TCGGCTTTTTTGGCACATGGATCAACAAAATCGGCAAGGTCTCAGGGACCTTGTTAACAGTGGAGTAACT
ATTCAGATTATGAGAGCATCAGAGTATTATCACTGCTGGAGGAATTTTGTCAACTACCCACCTGGGGATG
AAGCTCACTGGCCACAATACCCACCTCTGTGGATGATGTTGTACGCACTGGAGCTGCACTGCATAATTCT
AAGTCTTCCACCCTGTTTAAAGATTTCAAGAAGATGGCAAAATCATCTTACATTTTTCAGACTTCATCTT
CAAAACTGCCATTACCAAACGATTCCGCCACACATCCTTTTAGCTACAGGGCTGATACATCCTTCTGTGG
CTTGGAGATGA

Translation (236 aa):
MTSEKGPSTGDPTLRRRIEPWEFDVFYDPRELRKEACLLYEIKWGMSRKIWRSSGKNTTNHVEVNFIKKF
TSERDFHPSMSCSITWFLSWSPCWECSQAIREFLSRHPGVTLVIYVARLFWHMDQQNRQGLRDLVNSGVT
IQIMRASEYYHCWRNFVNYPPGDEAHWPQYPPLWMMLYALELHCIILSLPPCLKISRRWQNHLTFFRLHL
QNCHYQTIPPHILLATGLIHPSVAWR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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