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Report for CCDS66190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
66190.1 Public Homo sapiens 11 CCDC90B 24 110 108 CCDS HistoryNCBI Gene:60492Re-query CCDS DB by CCDS ID:66190.1Re-query CCDS DB by GeneID:60492See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 66190.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000455220.6 ENSP00000390990.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000455220.6Link to Ensembl Protein Viewer:ENSP00000390990.3Re-query CCDS DB by Nucleotide ID:ENST00000455220Re-query CCDS DB by Protein ID:ENSP00000390990
Original member Current member NCBI NM_001286116.2 NP_001273045.2 Accepted alive Link to Nucleotide Sequence:NM_001286116.2Link to Protein Sequence:NP_001273045.2Re-query CCDS DB by Nucleotide ID:NM_001286116Re-query CCDS DB by Protein ID:NP_001273045Link to BLAST:NP_001273045.2
Original member Current member NCBI NM_001286117.3 NP_001273046.1 Accepted alive Link to Nucleotide Sequence:NM_001286117.3Link to Protein Sequence:NP_001273046.1Re-query CCDS DB by Nucleotide ID:NM_001286117Re-query CCDS DB by Protein ID:NP_001273046Link to BLAST:NP_001273046.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273045.2 153 Q9GZT6-3 153 100% 0 0
NP_001273046.1 153 Q9GZT6-3 153 100% 0 0

Chromosomal Locations for CCDS 66190.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83261911 83261966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83265865 83265979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83273647 83273700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83273793 83273864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83273951 83273992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83274639 83274740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83278726 83278746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGGTCACTCAAGCTCAACAGGAAATAACAGTACAACAGCTAATGGCTCATTTGGATGCTATCAGGAAAG
AC
ATGGTCATCCTAGAGAAAAGTGAATTTGCAAATCTGAGAGCAGAGAATGAGAAAATGAAAATTGAATT
A
GACCAAGTTAAGCAACAACTAATGCATGAAACCAGTCGAATCAGAGCAGATAATAAACTGGATATCAAC
TTA
GAAAGGAGCAGAGTAACAGATATGTTTACAGATCAAGAAAAGCAACTTATGGAAACAACTACAGAAT
TT
ACAAAAAAGGATACTCAAACCAAAAGTATTATTTCAGAGACCAGTAATAAAATTGACGCTGAAATTGC
T
TCCTTAAAAACACTGATGGAATCTAACAAACTTGAGACAATTCGTTATCTTGCAGCTTCGGTGTTTACT
TGC
CTGGCAATAGCATTGGGATTTTATAGATTCTGGAAGTAG


Translation (153 aa):
MVTQAQQEITVQQLMAHLDAIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLMHETSRIRADNKLDIN
L
ERSRVTDM
FTDQEKQLMETTTEFTKKDTQTKSIISETSNKIDAEIASLKTLMESNKLETIRYLAASVFT
C
LAIALGFYRFWK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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