NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS63673.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
63673.1 Public Homo sapiens 3 FAM107A 24 110 108 CCDS HistoryNCBI Gene:11170Re-query CCDS DB by CCDS ID:63673.1Re-query CCDS DB by GeneID:11170See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 63673.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000474531.5 ENSP00000419124.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000474531.5Link to Ensembl Protein Viewer:ENSP00000419124.1Re-query CCDS DB by Nucleotide ID:ENST00000474531Re-query CCDS DB by Protein ID:ENSP00000419124
Original member Current member NCBI NM_001282714.2 NP_001269643.1 Accepted alive Link to Nucleotide Sequence:NM_001282714.2Link to Protein Sequence:NP_001269643.1Re-query CCDS DB by Nucleotide ID:NM_001282714Re-query CCDS DB by Protein ID:NP_001269643Link to BLAST:NP_001269643.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269643.1 175 O95990-4 175 100% 0 0

Chromosomal Locations for CCDS 63673.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 58566588 58566695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58567208 58567364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58569691 58569865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58589206 58589269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58626971 58626994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGGGAGCAGCCCAGGGGAAGAAGAAAACATACTCTCCTCAGGCCAGATTTCATAGTGAAAATGAGAAGC
AGAGACGAAATGGCTCAGCCGCCATGTACTCGGAGATCCAGAGGGAGCGGGCAGACATTGGGGGCCTGAT
GGCCCGGCCAGAATACAGAGAGTGGAATCCGGAGCTCATCAAGCCCAAGAAGCTGCTGAACCCCGTGAAG
GCCTCTCGGAGTCACCAGGAGCTCCACCGGGAGCTGCTCATGAACCACAGAAGGGGCCTTGGTGTGGACA
GCAAGCCAGAGCTGCAGCGTGTCCTAGAGCACCGCCGGCGGAACCAGCTCATCAAGAAGAAGAAGGAGGA
GCTGGAAGCCAAGCGGCTGCAGTGCCCCTTTGAGCAGGAGCTGCTGAGACGGCAGCAGAGGCTGAACCAG
CTGGAAAAACCACCAGAGAAGGAAGAGGATCACGCCCCCGAGTTTATTAAAGTCAGGGAAAACCTGCGGA
GAATTGCCACACTGACCAGCGAAGAGAGAGAGCTGTAG

Translation (175 aa):
MGAAQGKKKTYSPQARFHSENEKQRRNGSAAMYSEIQRERADIGGLMARPEYREWNPELIKPKKLLNPVK
ASRSHQELHRELLMNHRRGLGVDSKPELQRVLEHRRRNQLIKKKKEELEAKRLQCPFEQELLRRQQRLNQ
LEKPPEKEEDHAPEFIKVRENLRRIATLTSEEREL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH