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Report for CCDS54955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54955.1 Public Homo sapiens 5 ZFP62 24 110 108 CCDS HistoryNCBI Gene:643836Re-query CCDS DB by CCDS ID:54955.1Re-query CCDS DB by GeneID:643836See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54955.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000502412.2 ENSP00000423820.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000502412.2Link to Ensembl Protein Viewer:ENSP00000423820.1Re-query CCDS DB by Nucleotide ID:ENST00000502412Re-query CCDS DB by Protein ID:ENSP00000423820
Original member Current member NCBI NM_001172638.2 NP_001166109.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001172638.2Link to Protein Sequence:NP_001166109.1Re-query CCDS DB by Nucleotide ID:NM_001172638Re-query CCDS DB by Protein ID:NP_001166109Link to BLAST:NP_001166109.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166109.1 900 Q8NB50-1 900 100% 0 0

Chromosomal Locations for CCDS 54955.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 180848792 180851493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180861219 180861219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2703 nt):
ATGTCACATTTGAAGACGAGCACTGAGGATGAGGAACCAACTGAAGAATATGAAAATGTTGGAAATGCAG
CA
TCTAAGTGGCCAAAAGTGGAGGATCCTATGCCTGAATCTAAGGTTGGTGACACATGTGTTTGGGATAG
C
AAGGTAGAGAATCAACAGAAAAAGCCTGTGGAAAACAGGATGAAGGAGGACAAAAGCAGCATCAGGGAA
GCA
ATCAGCAAAGCCAAGAGTACAGCAAATATAAAGACAGAACAGGAAGGTGAGGCATCTGAGAAGAGCT
TG
CATCTGAGCCCACAGCATATCACACACCAGACTATGCCTATAGGACAGAGAGGCAGTGAGCAAGGCAA
A
CGTGTGGAGAACATTAATGGAACCTCCTACCCTAGTCTACAGCAGAAAACCAATGCTGTTAAGAAATTA
CAT
AAATGTGATGAATGTGGGAAATCCTTCAAATATAATTCCCGCCTTGTTCAACATAAAATTATGCACA
CT
GGGGAAAAGCGCTATGAATGTGATGACTGTGGAGGGACTTTCCGGAGCAGCTCGAGCCTTCGGGTCCA
C
AAACGGATCCACACTGGGGAGAAGCCGTACAAGTGTGAGGAATGTGGGAAAGCCTACATGTCCTACTCC
AGC
CTTATAAACCACAAAAGCACCCATTCTGGGGAGAAGAACTGTAAATGTGATGAATGTGGAAAATCCT
TC
AATTATAGCTCTGTTCTGGACCAGCATAAAAGGATCCACACTGGGGAGAAGCCCTATGAATGTGGTGA
G
TGTGGGAAGGCCTTCAGGAACAGCTCTGGGCTCAGAGTCCACAAAAGGATCCACACGGGGGAGAAGCCC
TAT
GAATGCGACATCTGTGGGAAAACCTTCAGTAACAGCTCTGGCCTTAGGGTCCATAAAAGGATCCACA
CA
GGTGAGAAACCTTACGAATGTGATGAGTGTGGGAAGGCCTTCATTACTTGTAGAACACTTCTCAACCA
T
AAAAGCATCCACTTTGGAGATAAACCCTATAAATGTGATGAGTGTGAGAAATCTTTTAATTATAGCTCT
CTT
CTCATTCAGCATAAAGTCATCCACACTGGAGAGAAACCTTATGAATGTGATGAATGTGGGAAGGCTT
TC
AGGAACAGCTCAGGCCTCATAGTGCATAAAAGGATCCACACAGGAGAGAAACCTTACAAGTGTGATGT
C
TGTGGCAAAGCATTCAGCTATAGCTCAGGCCTCGCAGTCCATAAAAGCATTCACCCTGGGAAGAAAGCC
CAT
GAATGTAAGGAGTGTGGGAAATCCTTTAGTTATAACTCACTACTTCTTCAACACAGAACTATTCATA
CC
GGAGAGAGACCTTATGTATGTGATGTGTGTGGGAAAACGTTCAGAAACAATGCAGGCCTCAAAGTCCA
C
AGGAGGCTCCATACTGGGGAAAAACCATATAAGTGTGATGTGTGTGGGAAAGCCTATATCTCACGCTCT
AGC
CTTAAAAATCACAAAGGAATCCACCTTGGGGAGAAGCCCTATAAATGTAGCTATTGTGAGAAATCCT
TC
AACTACAGCTCTGCCCTTGAACAGCATAAAAGGATTCATACCAGGGAAAAACCCTTTGGGTGTGATGA
G
TGTGGTAAAGCTTTCAGAAATAATTCTGGCCTTAAAGTACATAAACGAATCCACACTGGGGAACGACCT
TAC
AAATGTGAAGAATGTGGGAAAGCATACATCTCTCTCTCGAGCCTTATAAATCATAAAAGTGTACACC
CT
GGGGAGAAGCCCTTTAAGTGTGACGAGTGTGAGAAGGCCTTCATCACATACCGAACCCTTACAAACCA
C
AAAAAAGTTCATCTTGGGGAGAAGCCCTACAAATGTGATGTGTGTGAGAAATCTTTTAATTACACATCG
CTC
CTTTCTCAGCACAGAAGGGTCCACACTAGAGAGAAACCCTATGAATGTGACAGGTGTGAGAAGGTCT
TC
AGAAACAACTCAAGCCTTAAAGTTCATAAAAGAATCCATACTGGGGAGAGGCCCTATGAATGTGATGT
G
TGTGGAAAAGCCTACATCTCACACTCAAGCCTTATTAACCATAAGAGTACCCACCCTGGCAGGACACCC
CAT
ACATGTGATGAATGTGGAAAAGCTTTTTTCTCAAGCAGAACTCTTATAAGCCATAAAAGAGTCCATC
TT
GGGGAGAAACCCTTCAAGTGTGTTGAGTGTGGGAAATCTTTCAGTTACAGCTCTCTCCTTTCTCAGCA
C
AAGAGGATCCACACAGGGGAGAAACCCTATGTGTGTGATAGGTGTGGGAAGGCCTTCAGGAACAGCTCA
GGC
CTCACAGTGCATAAAAGGATCCACACAGGTGAGAAACCCTATGAATGTGATGAGTGTGGGAAGGCAT
AC
ATCTCACACTCAAGTCTTATCAATCATAAAAGTGTCCACCAGGGGAAGCAGCCCTATAATTGTGAGTG
T
GGGAAATCCTTCAATTATAGATCAGTCCTTGACCAGCACAAAAGGATCCACACTGGAAAGAAGCCATAC
CGA
TGTAATGAGTGTGGTAAGGCTTTTAATATCAGATCAAATCTCACCAAGCATAAAAGAACCCATACTG
GA
GAGGAATCTTTAAATGTGATATATGTGGGAAGTTATAGTGGCACATCCCAGAAGAGAACCTATGAGGG
A
GGGAATGCCCTGGATGGGGGCAGGATGAGGATGCCTCTGTAG


Translation (900 aa):
MSHLKTSTEDEEPTEEYENVGNAASKWPKVEDPMPESKVGDTCVWDSKVENQQKKPVENRMKEDKSSIRE
A
ISKAKSTANIKTEQEGEASEKSLHLSPQHITHQTMPIGQRGSEQGKRVENINGTSYPSLQQKTNAVKKL
H
KCDECGKSFKYNSRLVQHKIMHTGEKRYECDDCGGTFRSSSSLRVHKRIHTGEKPYKCEECGKAYMSYS
S
LINHKSTHSGEKNCKCDECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKP
Y
ECDICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSS
L
LIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDVCGKAFSYSSGLAVHKSIHPGKKA
H
ECKECGKSFSYNSLLLQHRTIHTGERPYVCDVCGKTFRNNAGLKVHRRLHTGEKPYKCDVCGKAYISRS
S
LKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHKRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERP
Y
KCEECGKAYISLSSLINHKSVHPGEKPFKCDECEKAFITYRTLTNHKKVHLGEKPYKCDVCEKSFNYTS
L
LSQHRRVHTREKPYECDRCEKVFRNNSSLKVHKRIHTGERPYECDVCGKAYISHSSLINHKSTHPGRTP
H
TCDECGKAFFSSRTLISHKRVHLGEKPFKCVECGKSFSYSSLLSQHKRIHTGEKPYVCDRCGKAFRNSS
G
LTVHKRIHTGEKPYECDECGKAYISHSSLINHKSVHQGKQPYNCECGKSFNYRSVLDQHKRIHTGKKPY
R
CNECGKAFNIRSNLTKHKRTHTGEESLNVIYVGSYSGTSQKRTYEGGNALDGGRMRMPL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser