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Report for CCDS5346.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5346.1 Public Homo sapiens 7 CYTH3 24 110 108 CCDS HistoryNCBI Gene:9265Re-query CCDS DB by CCDS ID:5346.1Re-query CCDS DB by GeneID:9265See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5346.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000350796.8 ENSP00000297044.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000350796.8Link to Ensembl Protein Viewer:ENSP00000297044.7Re-query CCDS DB by Nucleotide ID:ENST00000350796Re-query CCDS DB by Protein ID:ENSP00000297044
Original member Current member NCBI NM_004227.4 NP_004218.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004227.4Link to Protein Sequence:NP_004218.1Re-query CCDS DB by Nucleotide ID:NM_004227Re-query CCDS DB by Protein ID:NP_004218Link to BLAST:NP_004218.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004218.1 399 O43739-2 399 100% 0 0

Chromosomal Locations for CCDS 5346.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 6164944 6165016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6165273 6165427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6165545 6165616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6165734 6165810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6170535 6170646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6170830 6170978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6171202 6171314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6173653 6173733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6177823 6177941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6187050 6187116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6187657 6187721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6190449 6190531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6272474 6272507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGGATGAAGACGGCGGCGGCGAGGGTGGTGGCGTGCCTGAAGACCTCTCATTAGAAGAGAGAGAAGAAC
TTCTAGACATTCGTCGAAGAAAAAAGGAACTTATTGATGACATTGAGAGGCTGAAATATGAAATTGCAGA
GGTGATGACAGAGATCGACAATCTAACTTCCGTAGAGGAGAGCAAAACGACTCAGAGGAACAAACAGATA
GCCATGGGAAGAAAGAAATTCAACATGGATCCCAAAAAGGGAATTCAGTTTCTAATAGAAAATGACCTGC
TACAGAGTTCCCCAGAAGACGTCGCCCAGTTCCTTTATAAAGGAGAAGGCCTAAATAAGACCGTCATTGG
GGACTACCTGGGTGAAAGGGATGAATTTAATATTAAAGTTCTTCAAGCCTTTGTTGAACTCCATGAGTTT
GCTGATCTCAACCTTGTACAAGCCTTAAGGCAGTTCTTATGGAGCTTCAGGCTGCCCGGGGAGGCGCAGA
AGATTGATCGCATGATGGAGGCTTTCGCTTCTCGCTACTGCCTGTGCAACCCCGGGGTCTTCCAGTCCAC
AGACACGTGCTACGTGCTGTCATTCGCCATCATCATGCTCAACACCAGCCTCCACAACCACAACGTGCGT
GACAAGCCCACGGCAGAACGGTTCATCGCCATGAACCGCGGCATCAACGAGGGCGGGGACCTCCCTGAGG
AGCTGCTGAGGAATTTGTATGAGAGCATTAAGAACGAGCCATTTAAGATCCCGGAGGACGACGGGAACGA
CCTGACCCACACCTTCTTCAACCCCGACCGCGAGGGCTGGCTCCTGAAGCTGGGAGGGCGTGTGAAGACC
TGGAAGCGCCGGTGGTTCATCCTGACCGATAACTGCCTCTATTACTTTGAATACACAACAGATAAGGAGC
CCAGGGGAATCATCCCGTTGGAAAACCTCAGCATCAGGGAGGTGGAGGACCCCCGGAAACCCAACTGTTT
TGAGCTCTACAATCCCAGCCACAAAGGGCAGGTCATCAAGGCCTGTAAGACTGAGGCCGACGGCCGCGTG
GTAGAGGGGAACCATGTGGTGTACCGGATCTCAGCCCCGAGCCCGGAGGAGAAGGAGGAGTGGATGAAAT
CCATCAAAGCCAGTATCAGCAGAGATCCCTTCTATGACATGTTGGCAACGAGGAAACGAAGGATTGCCAA
TAAAAAATAG

Translation (399 aa):
MDEDGGGEGGGVPEDLSLEEREELLDIRRRKKELIDDIERLKYEIAEVMTEIDNLTSVEESKTTQRNKQI
AMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDEFNIKVLQAFVELHEF
ADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVR
DKPTAERFIAMNRGINEGGDLPEELLRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGRVKT
WKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRV
VEGNHVVYRISAPSPEEKEEWMKSIKASISRDPFYDMLATRKRRIANKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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