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Report for CCDS53395.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53395.1 Public Homo sapiens 1 CD84 24 110 108 CCDS HistoryNCBI Gene:8832Re-query CCDS DB by CCDS ID:53395.1Re-query CCDS DB by GeneID:8832See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53395.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000534968.5 ENSP00000442845.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534968.5Link to Ensembl Protein Viewer:ENSP00000442845.1Re-query CCDS DB by Nucleotide ID:ENST00000534968Re-query CCDS DB by Protein ID:ENSP00000442845
Original member Current member NCBI NM_001184882.2 NP_001171811.1 Accepted alive Link to Nucleotide Sequence:NM_001184882.2Link to Protein Sequence:NP_001171811.1Re-query CCDS DB by Nucleotide ID:NM_001184882Re-query CCDS DB by Protein ID:NP_001171811Link to BLAST:NP_001171811.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171811.1 214 Q9UIB8-7 214 100% 0 0

Chromosomal Locations for CCDS 53395.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 160548256 160548321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160549917 160549979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160550938 160551035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160553378 160553497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160553895 160554146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160579392 160579437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGGCTCAGCACCACCTATGGATCTTGCTCCTTTGCCTGCAAACCTGTCGGCTTGGGAAACCAAAAATTA
CACAGAGTTTAATGGCATCTGTGAACAGCACCTGTAATGTCACACTGACATGCTCTGTAGAGAAAGAAGA
AAAGAATGTGACATACAATTGGAGTCCCCTGGGAGAAGAGGGTAATGTCCTTCAAATCTTCCAGACTCCT
GAGGACCAAGAGCTGACTTACACGTGTACAGCCCAGAACCCTGTCAGCAACAATTCTGACTCCATCTCTG
CCCGGCAGCTCTGTGCAGACATCGCAATGGGCTTCCGTACTCACCACACCGGGTTGCTGAGCGTGCTGGC
TATGTTCTTTCTGCTTGTTCTCATTCTGTCTTCAGTGTTTTTGTTCCGTTTGTTCAAGAGAAGACAAGAT
GCTGCCTCAAAGAAAACCATATACACATATATCATGGCTTCAAGGAACACCCAGCCAGCAGAGTCCAGAA
TCTATGATGAAATCCTGCAGTCCAAGGTGCTTCCCTCCAAGGAAGAGCCAGTGAACACAGTTTATTCCGA
AGTGCAGTTTGCTGATAAGATGGGGAAAGCCAGCACACAGGACAGTAAACCTCCTGGGACTTCAAGCTAT
GAAATTGTGATCTAG

Translation (214 aa):
MAQHHLWILLLCLQTCRLGKPKITQSLMASVNSTCNVTLTCSVEKEEKNVTYNWSPLGEEGNVLQIFQTP
EDQELTYTCTAQNPVSNNSDSISARQLCADIAMGFRTHHTGLLSVLAMFFLLVLILSSVFLFRLFKRRQD
AASKKTIYTYIMASRNTQPAESRIYDEILQSKVLPSKEEPVNTVYSEVQFADKMGKASTQDSKPPGTSSY
EIVI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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