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Report for CCDS52364.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52364.1 Public Mus musculus 7 Mical2 23 108 98 CCDS HistoryNCBI Gene:320878Re-query CCDS DB by CCDS ID:52364.1Re-query CCDS DB by GeneID:320878See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52364.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051308.14 ENSMUSP00000062443.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051308.14Link to Ensembl Protein Viewer:ENSMUSP00000062443.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000051308Re-query CCDS DB by Protein ID:ENSMUSP00000062443
Original member Current member EBI ENSMUST00000106645.7 ENSMUSP00000102256.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106645.7Link to Ensembl Protein Viewer:ENSMUSP00000102256.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106645Re-query CCDS DB by Protein ID:ENSMUSP00000102256
Current member NCBI NM_001381862.1 NP_001368791.1 Accepted alive Link to Nucleotide Sequence:NM_001381862.1Link to Protein Sequence:NP_001368791.1Re-query CCDS DB by Nucleotide ID:NM_001381862Re-query CCDS DB by Protein ID:NP_001368791Link to BLAST:NP_001368791.1
Original member NCBI NM_027587.2 NP_081863.2 Removed alive Link to Nucleotide Sequence:NM_027587.2Link to Protein Sequence:NP_081863.2Re-query CCDS DB by Nucleotide ID:NM_027587Re-query CCDS DB by Protein ID:NP_081863Link to BLAST:NP_081863.2

Chromosomal Locations for CCDS 52364.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 112380294 112380428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112380956 112382237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112391266 112391357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112394794 112394874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112397472 112397565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112407560 112407659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112411390 112411463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112412803 112412987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2043 nt):
ATGAACCAAAGAGCACCATCGCCTCCAAAGGAGCCGCCTCCTCCTCCATCTTTGTCTTCTTCATCTTCCC
TACCATCTTCATTTTCTTCAGCCAGTGTACCTGGGCACACTGCAGACGATTCCTCCTCTCCCCAGGTGCC
AGCTTACAACCTCCACTCCCCACAGATCTCCAGAGGCGATGTCAGCCCCACTCCAATCTACCTCAGACGT
GCCAGGGCTCAAGGGATTGTGAAGGAAATTCCCCTCTACCTGCCGCATAGCCCCATGCTAGAGAGCACAG
AAGACTGCCTGGTCGAGCCCGGTAGAGAAAGCCTCAGAAGTCCTGAGGAGATCTCCTCTTCAGAGGGCTG
CCAGGAAGCCCGGGCTCTTGGAAACACCAGAAGCATACAGCACCCCATTTTAGGGAAGGACCAGTATTTG
CCCAATCAAAACCTAGCTCTTGGTGCTGCAGGGAACCCTGGAGACCCGAGGGAGGAATCCAGGATGGGAC
AACCAGGTGGACCAGAGCTGTCCAAAGAAAGGAAGTTGGGCTTGAAGAAATTAGTCCTCACTGAGGAGCA
GAAGAACAAGTTGCTAGACTGGAGTGACTGCACCCAGGAGCACAAGACTGGGGAGCAGCTCTCTCAGGAA
AGTGCTGAGAACATCAGAGGTGGTAGCCTGAAGCCAACCTGCTCTTCTACCCTCTCTCAGGCGGTGAAAG
AGAAGCTGCTATCCCAGAAAAAGGCCCTGGGGGGGATGCGTACCCCAGCTGTCAAAGCACCTCAGGAGCG
AGAGGTGCCCCCACCCAAGTCCCCCCTGAAGCTCATAGCAAATGCCATCCTTAGGTCTCTGCTCCACAAC
TCCGAAGCTGGAAAGAAAACCAGCCCTAAGCCAGAGTCCAAAACTTTGCCTAGGGGCCAGCCACATGCTC
GTTCGTTCAGCCTCCGGAAACTGGGTTCCAGTAAAGATGGGGACCAGCAGTCTCCAGGGAGACACATGGC
CAAGAAGGCTTCAGCATTCTTCTCTCTGGCTTCTCCAACATCTAAGGTTGCCCAAGCCTCAGACCTTAGC
CTTCCCAACTCCATCCTCCGCAGCCGGAGTTTACCGAGTCGTCCATCCAAGATGTTCTTTTCAACCACAC
CTCACAGCAAGGTTGAAGATGTCCCCACACTCCTGGAGAAAGTGAGTTTGCAGGATGCCACTCACAGTCC
AAAGACAGGAGCCTCACATATTTCTTCCCTTGGCCTCAAAGATAAATCCTTTGAGAGTTTTCTCCAGGAA
TGCAAACAAAGAAAGGACATTGGGGACTTCTTTAATAGCCCCAAGGAGGAGGGGCCACCAGGGAACAGAG
TCCCATCCTTGGAGAAGTTGGTACAGCCTGTTGGCAGCACCTCCATGGGACAGGTGGCACATCCTTCTTC
CACAGGGCAAGATGCACACCCTGTAGCTCCAGTGACAGAAGCCACCTCTTCTCCCACCTCGTCCTCTGCA
GAGGAAGAAGCCGACTCCCAGCTTTCCTTAAGGATAAAGGAGAAGATACTCAGAAGAAGGAGGAAGCTGG
AAAAGCAGTCAGCTAAGCAAGAAGAATTGAAAAGACTCCATAAGGCTCAGGCCATCCAGAGACAACTAGA
GGAGGTGGAGGAGCGGCAGAGGACATTGGCGATCCAGGGCGTGAAGCTGGAGAAGGTGCTGAGAGGAGAA
GCAGATTCAGGGACACAGGATGAAGCCCAGCTTTTGCAGGAATGGTTTAAGCTGGTTCTGGAGAAGAATA
AATTAATGCGATATGAGTCGGAGCTACTGATCATGGCCCAAGAACTAGAACTAGAAGATCATCAGAGCAG
ACTGGAGCAGAAACTACGACAGAAAATGCTCAAGGATGAGGGCCAGAAAGACGAGAATGACCTAAAGGAG
GAGCAAGAAATATTCGAGGAGATGATGCAGGTGATTGAGCAAAGAAACAAGCTCGTGGATTCCCTAGAGG
AACAGCGGGTCAAAGAAAGAACCCAAGACCAACACTTTGAAAACTTTGTTCTCTCCAGAGGCTGTCAGCT
CAGCAGGACTTGA

Translation (680 aa):
MNQRAPSPPKEPPPPPSLSSSSSLPSSFSSASVPGHTADDSSSPQVPAYNLHSPQISRGDVSPTPIYLRR
ARAQGIVKEIPLYLPHSPMLESTEDCLVEPGRESLRSPEEISSSEGCQEARALGNTRSIQHPILGKDQYL
PNQNLALGAAGNPGDPREESRMGQPGGPELSKERKLGLKKLVLTEEQKNKLLDWSDCTQEHKTGEQLSQE
SAENIRGGSLKPTCSSTLSQAVKEKLLSQKKALGGMRTPAVKAPQEREVPPPKSPLKLIANAILRSLLHN
SEAGKKTSPKPESKTLPRGQPHARSFSLRKLGSSKDGDQQSPGRHMAKKASAFFSLASPTSKVAQASDLS
LPNSILRSRSLPSRPSKMFFSTTPHSKVEDVPTLLEKVSLQDATHSPKTGASHISSLGLKDKSFESFLQE
CKQRKDIGDFFNSPKEEGPPGNRVPSLEKLVQPVGSTSMGQVAHPSSTGQDAHPVAPVTEATSSPTSSSA
EEEADSQLSLRIKEKILRRRRKLEKQSAKQEELKRLHKAQAIQRQLEEVEERQRTLAIQGVKLEKVLRGE
ADSGTQDEAQLLQEWFKLVLEKNKLMRYESELLIMAQELELEDHQSRLEQKLRQKMLKDEGQKDENDLKE
EQEIFEEMMQVIEQRNKLVDSLEEQRVKERTQDQHFENFVLSRGCQLSRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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