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Report for CCDS48556.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48556.1 Public Mus musculus 10 Sim1 23 108 98 CCDS HistoryNCBI Gene:20464Re-query CCDS DB by CCDS ID:48556.1Re-query CCDS DB by GeneID:20464See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48556.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020071.3 ENSMUSP00000020071.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020071.3Link to Ensembl Protein Viewer:ENSMUSP00000020071.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020071Re-query CCDS DB by Protein ID:ENSMUSP00000020071
Original member Current member NCBI NM_011376.3 NP_035506.2 Accepted alive Link to Nucleotide Sequence:NM_011376.3Link to Protein Sequence:NP_035506.2Re-query CCDS DB by Nucleotide ID:NM_011376Re-query CCDS DB by Protein ID:NP_035506Link to BLAST:NP_035506.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035506.2 765 Q61045 765 100% 0 0

Chromosomal Locations for CCDS 48556.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 50895897 50896071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 50904785 50904867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 50907910 50907999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 50908478 50908586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 50908718 50908803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 50909380 50909579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 50909796 50909902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 50910524 50910671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 50940466 50940634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 50981323 50981722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 50983611 50984341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2298 nt):
ATGAAAGAAAAGTCTAAAAATGCTGCCCGAACGAGGAGGGAGAAAGAAAACAGTGAATTTTATGAACTGG
CTAAATTACTGCCTTTACCCTCAGCCATCACCTCCCAACTGGACAAAGCATCCATCATCAGACTCACGAC
CAGCTATCTCAAAATGAGAGTGGTCTTTCCAGAAGGGCTTGGCGAGGCGTGGGGCCACACCAGTCGAACC
AGCCCCTTGGACAACGTTGGTCGCGAACTCGGCTCTCATCTACTCCAGACTCTGGATGGCTTCATCTTCG
TGGTGGCCCCAGATGGGAAGATCATGTACATTTCAGAGACAGCTTCAGTTCACCTGGGCCTTTCTCAGGT
AGAGCTGACTGGGAACAGCATCTATGAATATATCCACCCGGCTGACCACGATGAGATGACAGCCGTGCTC
ACAGCCCATCAGCCCTACCACTCTCACTTTGTACAGGAGTACGAGATCGAACGCTCCTTCTTTCTAAGGA
TGAAGTGTGTTTTGGCCAAGCGGAATGCTGGCCTCACCTGCGGTGGCTACAAGGTCATTCACTGTAGTGG
CTACCTGAAGATCCGCCAGTACAGCCTGGATATGTCTCCCTTTGATGGATGCTACCAAAATGTGGGCTTG
GTGGCTGTGGGTCACTCCCTGCCTCCGAGTGCTGTGACAGAGATCAAACTACACAGCAACATGTTCATGT
TCCGAGCCAGTCTGGATATGAAGCTTATTTTCCTGGACTCCAGGGTGGCAGAGCTGACTGGATATGAACC
TCAGGACTTGATTGAGAAGACCCTGTACCATCACGTGCATGGCTGTGACACCTTCCACCTACGCTGTGCA
CACCACTTACTGTTGGTGAAGGGACAAGTGACCACCAAGTACTACAGGTTCTTGGCGAAGCAGGGCGGCT
GGGTCTGGGTGCAGAGTTACGCCACCATCGTACACAACAGCCGCTCCTCCAGGCCGCACTGCATCGTCAG
CGTCAACTACGTCCTCACAGACACAGAATACAAAGGGCTACAGCTCTCCCTGGACCAGATATCAGCCTCT
AAGCCCACTTTCTCCTATACCAGCAGTTCCACTCCCACTATCTCGGACAACAGGAAGGGGGCCAAGTCAA
GGCTCTCCAGTAGCAAGTCAAAATCTAGGACCTCCCCATATCCCCAGTATTCGGGATTCCATACTGAGAG
ATCGGAATCTGACCATGACAGCCAGTGGGGTGGAAGTCCCCTGACTGATACTGCCTCCCCACAGCTCCTG
GACCCAGAGAGGCCTGGCTCTCAGCACGAATTGTCCTGTGCGTATAGGCAGTTCCCAGATCGCAGTTCTC
TCTGCTATGGTTTTGCTCTGGACCATTCCAGGCTGGTGGAGGACAGGCACTTCCACACCCAAGCCTGCGA
GGGAGGACGGTGCGAGGCAGGCAGGTACTTCCTGGGAGCACCACCTACTGGGAGAGATCCCTGGTGGGGC
TCTCGAGCAGCTTTGCCTCTTACCAAGGCCTCCCCGGAGAGCAGAGAAGCCTATGAGAACAGCATGCCTC
ATATCACCTCCATCCACAGAATCCACGGTCGAGGTCACTGGGATGAAGATAGTGTGGTCAGCTCTCCAGA
CCCTGGGTCAGCCAGTGAATCTGGTGACCGATACCGCACCGAACAGTATCAAAATAGCCCACATGAACCT
AGCAAAATTGAAACTCTCATAAGAGCCACCCAGCAGATGATTAAAGAGGAAGAGAACAGATTACAGCTAA
GGAAAGCCCCTCCAGACCAACTGGCTTCCATTAATGGAGCTGGGAAAAAACACTCCCTCTGTTTTGCAAA
CTATCAACAGCCCCCACCCACAGGTGAGGTCTGCCACAGCTCTGCTCTTGCCAGCACTTCACCATGTGAC
CATATCCAGCAGAGAGAGGGAAAGATGCTCAGCCCTCATGAAAATGACTATGACAACAGCCCCACTGCAC
TGTCTCGGATAAGTAGTCCTAGTTCTGATCGCATTACAAAGTCTAGTTTAATCCTGGCTAAAGACTATCT
ACATTCAGATATGTCTCCCCATCAGACAGCAGGAGACCATCCTGCCATCTCTCCAAACTGTTTTGGCTCC
CACCGGCAGTATTTTGATAAGCATGCCTATACATTGACTGGTTATGCCCTGGAACACTTATATGACAGTG
AGACTATTAGAAACTATTCCTTGGGCTGCAATGGCTCACACTTTGATGTGACTTCCCATCTAAGGATGCA
ACCAGACCCAGCACAAGGACACAAGGGAACATCTGTTATAATAACCAATGGAAGTTGA

Translation (765 aa):
MKEKSKNAARTRREKENSEFYELAKLLPLPSAITSQLDKASIIRLTTSYLKMRVVFPEGLGEAWGHTSRT
SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSIYEYIHPADHDEMTAVL
TAHQPYHSHFVQEYEIERSFFLRMKCVLAKRNAGLTCGGYKVIHCSGYLKIRQYSLDMSPFDGCYQNVGL
VAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEPQDLIEKTLYHHVHGCDTFHLRCA
HHLLLVKGQVTTKYYRFLAKQGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDTEYKGLQLSLDQISAS
KPTFSYTSSSTPTISDNRKGAKSRLSSSKSKSRTSPYPQYSGFHTERSESDHDSQWGGSPLTDTASPQLL
DPERPGSQHELSCAYRQFPDRSSLCYGFALDHSRLVEDRHFHTQACEGGRCEAGRYFLGAPPTGRDPWWG
SRAALPLTKASPESREAYENSMPHITSIHRIHGRGHWDEDSVVSSPDPGSASESGDRYRTEQYQNSPHEP
SKIETLIRATQQMIKEEENRLQLRKAPPDQLASINGAGKKHSLCFANYQQPPPTGEVCHSSALASTSPCD
HIQQREGKMLSPHENDYDNSPTALSRISSPSSDRITKSSLILAKDYLHSDMSPHQTAGDHPAISPNCFGS
HRQYFDKHAYTLTGYALEHLYDSETIRNYSLGCNGSHFDVTSHLRMQPDPAQGHKGTSVIITNGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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